RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 A0A1W2PQH9 124 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 MYBPHLA2RUH7 354 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 PRR19A6NJB7 356 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 A8MXQ7 604 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 ZNF263O14978 683 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 ADAM12O43184 909 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 SART1O43290 800 aaKnown RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 TBC1D4O60343 1298 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 OAZ2O95190 189 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 MMEP08473 750 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 OR4Q2P0C623 313 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 ODC1P11926 461 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 CHRNB2P17787 502 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 RPL17P18621 184 aaKnown RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 TYMPP19971 482 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 BMPR1AP36894 532 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 YWHAHQ04917 246 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 ASTE1Q2TB18 679 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 DNTTIP2Q5QJE6 756 aaKnown RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 TAF3Q5VWG9 929 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 PRSS55Q6UWB4 352 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 RAD9BQ6WBX8 426 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 PAQR9Q6ZVX9 377 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 DDX53Q86TM3 631 aaKnown RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 CRYBG2Q8N1P7 616 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 TMEM86AQ8N2M4 240 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 ZNF397Q8NF99 534 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 LNX1Q8TBB1 728 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 ZNF606Q8WXB4 792 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 AUTS2Q8WXX7 1259 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 SYN2Q92777 582 aaPredicted RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 FAM81BQ96LP2 452 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 PANX2Q96RD6 677 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 PCDHB18PQ96TA0 734 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 PKMYT1Q99640 499 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 CERS4Q9HA82 394 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 FBRSQ9HAH7 460 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 ALG13Q9NP73 1137 aaKnown RBP5.01□□□□□ -1.61
SF3B1-208ENST00000470268 TMEM30AQ9NV96 361 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 TMLHEQ9NVH6 421 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 SPG21Q9NZD8 308 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 PCDHA11Q9Y5I1 949 aa5.01□□□□□ -1.61
SF3B1-208ENST00000470268 SF3B1O75533 1304 aaKnown RBP eCLIP5□□□□□ -1.615e-9■■□□□ 11.8
SF3B1-208ENST00000470268 TDRD15B5MCY1 1934 aaKnown RBP5□□□□□ -1.61
SF3B1-208ENST00000470268 A0A087X0T9 212 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 EPOPA6NHQ4 379 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 CHURC1-FNTBB4DL54 471 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 C5orf67F2Z3F1 127 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 CLDN5O00501 218 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 DDX3XO00571 662 aaKnown RBP eCLIP5□□□□□ -1.61
SF3B1-208ENST00000470268 SYN3O14994 580 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 GRM6O15303 877 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 TRAPPC3O43617 180 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 CSPG5O95196 566 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 VNN2O95498 520 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 SOD2P04179 222 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 TPM1P09493 284 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 FAM163BP0C2L3 166 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 FAM228BP0C875 321 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 CCDC130P13994 396 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 FERP16591 822 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 CTNNB1P35222 781 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 LHX1P48742 406 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 CACNA2D1P54289 1103 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 GSDMDP57764 484 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 ERVFC1P60507 584 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 FMO1Q01740 532 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 KLHL30Q0D2K2 578 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 SLBPQ14493 270 aaKnown RBP eCLIP5□□□□□ -1.61
SF3B1-208ENST00000470268 ASIC2Q16515 512 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 NKG7Q16617 165 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 LCE1DQ5T752 114 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 UNC93AQ86WB7 457 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 FUKQ8N0W3 1084 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 VPS52Q8N1B4 723 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 B3GALNT2Q8NCR0 500 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 FAM13CQ8NE31 585 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 GIMAP7Q8NHV1 300 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 SLC30A5Q8TAD4 765 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 SPPL3Q8TCT6 385 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 TMEM169Q96HH4 297 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 PCED1BQ96HM7 432 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 HEXIM2Q96MH2 286 aaKnown RBP5□□□□□ -1.61
SF3B1-208ENST00000470268 BAG1Q99933 345 aaPredicted RBP5□□□□□ -1.61
SF3B1-208ENST00000470268 CLSTN3Q9BQT9 956 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 ACBD6Q9BR61 282 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 DESI2Q9BSY9 194 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 TTPALQ9BTX7 342 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 RHOBTB2Q9BYZ6 727 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 ZBP1Q9H171 429 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 TNKS2Q9H2K2 1166 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 NKX2-4Q9H2Z4 354 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 SNX25Q9H3E2 840 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 FAM124BQ9H5Z6 455 aaPredicted RBP5□□□□□ -1.61
SF3B1-208ENST00000470268 ACSS3Q9H6R3 686 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 NHEJ1Q9H9Q4 299 aaPredicted RBP5□□□□□ -1.61
SF3B1-208ENST00000470268 FAM49BQ9NUQ9 324 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 TAS2R14Q9NYV8 317 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms