RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ZSWIM3Q96MP5 696 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 CCDC113Q9H0I3 377 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 BHMT2Q9H2M3 363 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 WDR6Q9NNW5 1121 aaKnown RBP7.95□□□□□ -1.14
USP54-208ENST00000461520 ARHGEF4Q9NR80 690 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 GPR27Q9NS67 375 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 ZDHHC7Q9NXF8 308 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 SNTG2Q9NY99 539 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 DTLQ9NZJ0 730 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 IGSF9Q9P2J2 1179 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 KIF3AQ9Y496 699 aa7.95□□□□□ -1.14
USP54-208ENST00000461520 SF3B1O75533 1304 aaKnown RBP eCLIP7.95□□□□□ -1.149e-6■■■■■ 68.9
USP54-208ENST00000461520 PTGESO14684 152 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 TGM5O43548 720 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 RFPL2O75678 378 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 RECQL4O94761 1208 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 LRG1P02750 347 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 PRPHP41219 470 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 TOB1P50616 345 aaPredicted RBP7.94□□□□□ -1.14
USP54-208ENST00000461520 ELAVL2Q12926 359 aaKnown RBP7.94□□□□□ -1.14
USP54-208ENST00000461520 TDGQ13569 410 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 NAB2Q15742 525 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 DCAF4L1Q3SXM0 396 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 PDXDC1Q6P996 788 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 TEPPQ6URK8 271 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 ASCL5Q7RTU5 278 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 APBB1IPQ7Z5R6 666 aaPredicted RBP7.94□□□□□ -1.14
USP54-208ENST00000461520 PALB2Q86YC2 1186 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 TMEM105Q8N8V8 129 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 TXNDC5Q8NBS9 432 aaKnown RBP7.94□□□□□ -1.14
USP54-208ENST00000461520 RIN2Q8WYP3 895 aaPredicted RBP7.94□□□□□ -1.14
USP54-208ENST00000461520 SGSM3Q96HU1 749 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 AARSD1Q9BTE6 412 aaKnown RBP7.94□□□□□ -1.14
USP54-208ENST00000461520 TTPALQ9BTX7 342 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 SMOC2Q9H3U7 446 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 DDX19AQ9NUU7 478 aaKnown RBP7.94□□□□□ -1.14
USP54-208ENST00000461520 MYOTQ9UBF9 498 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 DUSP12Q9UNI6 340 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 WASF3Q9UPY6 502 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 DNM3Q9UQ16 869 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 CLUHO75153 1309 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 PHLPP2Q6ZVD8 1323 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 DENND4AQ7Z401 1863 aa7.94□□□□□ -1.14
USP54-208ENST00000461520 BLACEA4D250 179 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 CASTOR2A6NHX0 329 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 TMEM189-UBE2V1I3L0A0 370 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 K7ERI5 159 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 N4BP1O75113 896 aaKnown RBP7.93□□□□□ -1.14
USP54-208ENST00000461520 EDN1P05305 212 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 CENPBP07199 599 aaPredicted RBP7.93□□□□□ -1.14
USP54-208ENST00000461520 CLCN5P51795 746 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 EFEMP1Q12805 493 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 RAB33AQ14088 237 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 RABEP1Q15276 862 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 RILPL1Q5EBL4 403 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 ATF7IP2Q5U623 682 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 FAM171A1Q5VUB5 890 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 KRT79Q5XKE5 535 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 RBM12BQ8IXT5 1001 aaKnown RBP7.93□□□□□ -1.14
USP54-208ENST00000461520 LNX1Q8TBB1 728 aaPredicted RBP7.93□□□□□ -1.14
USP54-208ENST00000461520 PIP4K2CQ8TBX8 421 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 SMG7Q92540 1137 aaKnown RBP7.93□□□□□ -1.14
USP54-208ENST00000461520 RABGGTAQ92696 567 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 ZNF707Q96C28 371 aaPredicted RBP7.93□□□□□ -1.14
USP54-208ENST00000461520 B3GALT6Q96L58 329 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 PAAF1Q9BRP4 392 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 KIFC3Q9BVG8 833 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 NT5C3AQ9H0P0 336 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 MFSD1Q9H3U5 465 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 SMOC1Q9H4F8 434 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 EPS15L1Q9UBC2 864 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 TNFSF13BQ9Y275 285 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 PCDHB6Q9Y5E3 794 aa7.93□□□□□ -1.14
USP54-208ENST00000461520 TDRD15B5MCY1 1934 aaKnown RBP7.93□□□□□ -1.14
USP54-208ENST00000461520 GVINP1Q7Z2Y8 2422 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 PRR23AA6NEV1 266 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 CCDC169A6NNP5 214 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 PROB1E7EW31 1015 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 E9PMD0 336 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 K7ESM1 405 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 HNRNPA1P09651 372 aaKnown RBP eCLIP7.92□□□□□ -1.14
USP54-208ENST00000461520 SPATA31D3P0C874 917 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 PABPC1P11940 636 aaKnown RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 RPL17P18621 184 aaKnown RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 HOXA9P31269 272 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 NPTX2P47972 431 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 PEX3P56589 373 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 DMP1Q13316 513 aaPredicted RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 PSMD5Q16401 504 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 FAM26FQ5R3K3 315 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 YOD1Q5VVQ6 348 aaPredicted RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 RINT1Q6NUQ1 792 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 PRSS55Q6UWB4 352 aaPredicted RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 SPATA31D4Q6ZUB0 917 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 CEP57Q86XR8 500 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 HASPINQ8TF76 798 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 DRC1Q96MC2 740 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 UROC1Q96N76 676 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 PPP1R10Q96QC0 940 aaKnown RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 CLSTN3Q9BQT9 956 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms