RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 LMAN2Q12907 356 aa23.83■■□□□ 1.41
PTPN4-207ENST00000460162 PKDCCQ504Y2 493 aa23.83■■□□□ 1.41
PTPN4-207ENST00000460162 TRIM61Q5EBN2 209 aa23.83■■□□□ 1.41
PTPN4-207ENST00000460162 KIAA1211LQ6NV74 962 aa23.83■■□□□ 1.41
PTPN4-207ENST00000460162 TMEM270Q6UE05 265 aa23.83■■□□□ 1.41
PTPN4-207ENST00000460162 CNGB3Q9NQW8 809 aa23.83■■□□□ 1.41
PTPN4-207ENST00000460162 HBS1LQ9Y450 684 aaKnown RBP23.83■■□□□ 1.41
PTPN4-207ENST00000460162 KCNK5O95279 499 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 PI4KAP42356 2102 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 ZNF445P59923 1031 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 EIF4HQ15056 248 aaKnown RBP23.82■■□□□ 1.4
PTPN4-207ENST00000460162 E2F5Q15329 346 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 TRIP4Q15650 581 aaPredicted RBP23.82■■□□□ 1.4
PTPN4-207ENST00000460162 ISM2Q6H9L7 571 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 KLHL10Q6JEL2 608 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 LCLAT1Q6UWP7 414 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 ANKS1BQ7Z6G8 1248 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 PPM1KQ8N3J5 372 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 RNF139Q8WU17 664 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 NUSAP1Q9BXS6 441 aaKnown RBP23.82■■□□□ 1.4
PTPN4-207ENST00000460162 RAD54BQ9Y620 910 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 CKAP5Q14008 2032 aa23.82■■□□□ 1.4
PTPN4-207ENST00000460162 IGHV1OR15-9A0A0B4J2B8 117 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 PMLP29590 882 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 HARS2P49590 506 aaKnown RBP23.81■■□□□ 1.4
PTPN4-207ENST00000460162 ZNF132P52740 706 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 IRX4P78413 519 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 STARD3Q14849 445 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 STILQ15468 1287 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 GEN1Q17RS7 908 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 N4BP2L1Q5TBK1 243 aaPredicted RBP23.81■■□□□ 1.4
PTPN4-207ENST00000460162 FMNL3Q8IVF7 1028 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 UBA3Q8TBC4 463 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 UCMAQ8WVF2 138 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 NELFBQ8WX92 580 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 NDRG1Q92597 394 aaKnown RBP23.81■■□□□ 1.4
PTPN4-207ENST00000460162 SLC2A11Q9BYW1 496 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 ABCC13Q9NSE7 274 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 PILRBQ9UKJ0 227 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.81■■□□□ 1.4
PTPN4-207ENST00000460162 STON1Q9Y6Q2 735 aa23.81■■□□□ 1.4
PTPN4-207ENST00000460162 ATXN2Q99700 1313 aaKnown RBP23.81■■□□□ 1.4
PTPN4-207ENST00000460162 YJEFN3A6XGL0 299 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 E7ENQ6 273 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 CDX4O14627 284 aaPredicted RBP23.8■■□□□ 1.4
PTPN4-207ENST00000460162 LATS1O95835 1130 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 BMP6P22004 513 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 DAOAP59103 153 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 ENPP2Q13822 863 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 MORC3Q14149 939 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 BSPRYQ5W0U4 402 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 PSAPL1Q6NUJ1 521 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 SLC23A3Q6PIS1 610 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 RABEPKQ7Z6M1 372 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 PIWIL1Q96J94 861 aaKnown RBP23.8■■□□□ 1.4
PTPN4-207ENST00000460162 MRGPRX1Q96LB2 322 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 TMEM74BQ9NUR3 256 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 THAP10Q9P2Z0 257 aaPredicted RBP23.8■■□□□ 1.4
PTPN4-207ENST00000460162 CTNND2Q9UQB3 1225 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 PCDHB4Q9Y5E5 795 aa23.8■■□□□ 1.4
PTPN4-207ENST00000460162 MUC22E2RYF6 1773 aaPredicted RBP23.79■■□□□ 1.4
PTPN4-207ENST00000460162 PPP1R3GB7ZBB8 358 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 ITPKAP23677 461 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 NOVA1P51513 510 aaKnown RBP23.79■■□□□ 1.4
PTPN4-207ENST00000460162 GCNT1Q02742 428 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 MPPE1Q53F39 396 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 LMO3Q8TAP4 145 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 CEP76Q8TAP6 659 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 DDI1Q8WTU0 396 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 IRGQQ8WZA9 623 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 TFAP2BQ92481 460 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 EDEM1Q92611 657 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 STOML2Q9UJZ1 356 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 ANGPTL2Q9UKU9 493 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 CYP8B1Q9UNU6 501 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 PCDH15Q96QU1 1955 aa23.79■■□□□ 1.4
PTPN4-207ENST00000460162 M0QYV0 167 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 GNA14O95837 355 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 IL12RB1P42701 662 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 MARSP56192 900 aaKnown RBP23.78■■□□□ 1.4
PTPN4-207ENST00000460162 ZNF33AQ06730 810 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 PAK1Q13153 545 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 CNGA2Q16280 664 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 MSANTD2Q6P1R3 559 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 TRIM59Q8IWR1 403 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 RBBP8NLQ8NC74 664 aaPredicted RBP23.78■■□□□ 1.4
PTPN4-207ENST00000460162 SLC35F5Q8WV83 523 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 KAT5Q92993 513 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 SFMBT1Q9UHJ3 866 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 GON4LQ3T8J9 2241 aa23.78■■□□□ 1.4
PTPN4-207ENST00000460162 KMT2BQ9UMN6 2715 aaPredicted RBP23.77■■□□□ 1.4
PTPN4-207ENST00000460162 WASH3PC4AMC7 463 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 LCP1P13796 627 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 CSRP1P21291 193 aaKnown RBP23.77■■□□□ 1.4
PTPN4-207ENST00000460162 BRD2P25440 801 aaKnown RBP23.77■■□□□ 1.4
PTPN4-207ENST00000460162 HOXD9P28356 352 aaPredicted RBP23.77■■□□□ 1.4
PTPN4-207ENST00000460162 SHC2P98077 582 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 DUOXA1Q1HG43 343 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 FUT11Q495W5 492 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 KIAA1324Q6UXG2 1013 aaKnown RBP23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms