RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 GCNT1Q02742 428 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 GEN1Q17RS7 908 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 FAM217AQ8IXS0 508 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 CPXM2Q8N436 756 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 TRIML1Q8N9V2 468 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 CLEC4CQ8WTT0 213 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 GABRG3Q99928 467 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 INTS2Q9H0H0 1204 aaKnown RBP21.7■■□□□ 1.06
SDC1-205ENST00000447124 SLC27A6Q9Y2P4 619 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 RAD54BQ9Y620 910 aa21.7■■□□□ 1.06
SDC1-205ENST00000447124 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 DHPSP49366 369 aaPredicted RBP21.69■■□□□ 1.06
SDC1-205ENST00000447124 STPG1Q5TH74 334 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 IRF2BP1Q8IU81 584 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 TMEFF1Q8IYR6 380 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 CHPFQ8IZ52 775 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 SIX6OS1Q8N1H7 587 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 IPO4Q8TEX9 1081 aaKnown RBP21.69■■□□□ 1.06
SDC1-205ENST00000447124 PLD4Q96BZ4 506 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 PIWIL1Q96J94 861 aaKnown RBP21.69■■□□□ 1.06
SDC1-205ENST00000447124 ABCC13Q9NSE7 274 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 OLA1Q9NTK5 396 aaKnown RBP21.69■■□□□ 1.06
SDC1-205ENST00000447124 CACNA2D2Q9NY47 1150 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 CHMP5Q9NZZ3 219 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 RWDD2AQ9UIY3 292 aa21.69■■□□□ 1.06
SDC1-205ENST00000447124 PATE3B3GLJ2 98 aa21.68■■□□□ 1.06
SDC1-205ENST00000447124 M0QYV0 167 aa21.68■■□□□ 1.06
SDC1-205ENST00000447124 GFRA2O00451 464 aa21.68■■□□□ 1.06
SDC1-205ENST00000447124 RNF139Q8WU17 664 aa21.68■■□□□ 1.06
SDC1-205ENST00000447124 HSFY1Q96LI6 401 aa21.68■■□□□ 1.06
SDC1-205ENST00000447124 UBE2TQ9NPD8 197 aaPredicted RBP21.68■■□□□ 1.06
SDC1-205ENST00000447124 HBS1LQ9Y450 684 aaKnown RBP21.68■■□□□ 1.06
SDC1-205ENST00000447124 NUP205Q92621 2012 aa21.68■■□□□ 1.06
SDC1-205ENST00000447124 LAMA1P25391 3075 aa21.68■■□□□ 1.06
SDC1-205ENST00000447124 MAP3K13O43283 966 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 MSI1O43347 362 aaKnown RBP21.67■■□□□ 1.06
SDC1-205ENST00000447124 PTGER3P43115 390 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 GPD2P43304 727 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 STILQ15468 1287 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 SDE2Q6IQ49 451 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 GJB7Q6PEY0 223 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 LPCAT2Q7L5N7 544 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 PIGKQ92643 395 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 CRACR2AQ9BSW2 395 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 SLC6A17Q9H1V8 727 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 TMEM74BQ9NUR3 256 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 CALCOCO1Q9P1Z2 691 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 THAP10Q9P2Z0 257 aaPredicted RBP21.67■■□□□ 1.06
SDC1-205ENST00000447124 STOML2Q9UJZ1 356 aa21.67■■□□□ 1.06
SDC1-205ENST00000447124 TPRP12270 2363 aaKnown RBP21.66■■□□□ 1.06
SDC1-205ENST00000447124 TSPAN3O60637 253 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 FGFR1OPO95684 399 aaKnown RBP21.66■■□□□ 1.06
SDC1-205ENST00000447124 FYNP06241 537 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 NDUFV2P19404 249 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 SLC9A1P19634 815 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 RPL34P49207 117 aaKnown RBP21.66■■□□□ 1.06
SDC1-205ENST00000447124 APBA1Q02410 837 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 PPM1JQ5JR12 505 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 TMEM215Q68D42 235 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 MSANTD2Q6P1R3 559 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 DENND1BQ6P3S1 775 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 CYP2U1Q7Z449 544 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 DEFB119Q8N690 84 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 DDI1Q8WTU0 396 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 IRGQQ8WZA9 623 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 MIS12Q9H081 205 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 ACP6Q9NPH0 428 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 STON1Q9Y6Q2 735 aa21.66■■□□□ 1.06
SDC1-205ENST00000447124 CYBBP04839 570 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 HARS2P49590 506 aaKnown RBP21.65■■□□□ 1.06
SDC1-205ENST00000447124 IRX4P78413 519 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 ENPP2Q13822 863 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 BYSLQ13895 437 aaKnown RBP21.65■■□□□ 1.06
SDC1-205ENST00000447124 IL31Q6EBC2 164 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 ARMCX6Q7L4S7 300 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 CREBRFQ8IUR6 639 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 SORCS1Q8WY21 1168 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 SPACA7Q96KW9 195 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 CD93Q9NPY3 652 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 ELOVL2Q9NXB9 296 aa21.65■■□□□ 1.06
SDC1-205ENST00000447124 GOLGA6L7A0A1B0GV03 622 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 LTFP02788 710 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 KRT5P13647 590 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 HOXD9P28356 352 aaPredicted RBP21.64■■□□□ 1.05
SDC1-205ENST00000447124 IL12RB1P42701 662 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 MPPE1Q53F39 396 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 ADGRF1Q5T601 910 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 RNF43Q68DV7 783 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 SCUBE3Q8IX30 993 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 ZNF606Q8WXB4 792 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 MRGPRX1Q96LB2 322 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 SLC2A11Q9BYW1 496 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 CYTH4Q9UIA0 394 aa21.64■■□□□ 1.05
SDC1-205ENST00000447124 IGHV1OR15-9A0A0B4J2B8 117 aa21.63■■□□□ 1.05
SDC1-205ENST00000447124 LNP1A1A4G5 178 aa21.63■■□□□ 1.05
SDC1-205ENST00000447124 BECN2A8MW95 431 aa21.63■■□□□ 1.05
SDC1-205ENST00000447124 KHNYNO15037 678 aaKnown RBP21.63■■□□□ 1.05
SDC1-205ENST00000447124 IGLV3-27P01718 113 aa21.63■■□□□ 1.05
SDC1-205ENST00000447124 SGSHP51688 502 aa21.63■■□□□ 1.05
SDC1-205ENST00000447124 SPDYCQ5MJ68 293 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms