RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SLC39A10Q9ULF5 831 aa12.25□□□□□ -0.45
MSH6-204ENST00000445503 MSCO60682 206 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 INSRRP14616 1297 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 TPH1P17752 444 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 AVPR1AP37288 418 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 USP4Q13107 963 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 CMC1Q7Z7K0 106 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 TREML1Q86YW5 311 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 FBXO27Q8NI29 283 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 CMTM5Q96DZ9 223 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 PEBP4Q96S96 227 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 HES2Q9Y543 173 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 HOXC6P09630 235 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 ZFXP17010 805 aaPredicted RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 GNAZP19086 355 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 POU5F1BQ06416 359 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 SEPT6Q14141 434 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 KIZQ2M2Z5 673 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 RALGPS1Q5JS13 557 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 RWDD4Q6NW29 188 aaKnown RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 MCUQ8NE86 351 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 PIWIL2Q8TC59 973 aaKnown RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 TASP1Q9H6P5 420 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 STX18Q9P2W9 335 aaKnown RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 PCDHGC3Q9UN70 934 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 GLRA3O75311 464 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 GPC4O75487 556 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 METTL18O95568 372 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 DLDP09622 509 aaKnown RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 CPA3P15088 417 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 TTLL4Q14679 1199 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 ADAM32Q8TC27 787 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 NDRG1Q92597 394 aaKnown RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 USP13Q92995 863 aaPredicted RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 NMD3Q96D46 503 aaKnown RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 EBNA1BP2Q99848 306 aaKnown RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 FRMD8Q9BZ67 464 aaPredicted RBP12.24□□□□□ -0.45
MSH6-204ENST00000445503 SDCBP2Q9H190 292 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 Q9H521 79 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 NRDE2Q9H7Z3 1164 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 GTSE1Q9NYZ3 720 aa12.24□□□□□ -0.45
MSH6-204ENST00000445503 HBP1O60381 514 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 POLBP06746 335 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 BPGMP07738 259 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 RARBP10826 455 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 GMPRP36959 345 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 TBL3Q12788 808 aaKnown RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 CNGA3Q16281 694 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 PPP1R26Q5T8A7 1209 aaPredicted RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 ARFGAP1Q8N6T3 406 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 XPNPEP3Q9NQH7 507 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 C20orf96Q9NUD7 363 aaPredicted RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 PDP2Q9P2J9 529 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 LNPEPQ9UIQ6 1025 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 EFR3BQ9Y2G0 817 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 HBS1LQ9Y450 684 aaKnown RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 DCAF8L1A6NGE4 600 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 PLSCR1O15162 318 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 CCDC130P13994 396 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 SLC18A1P54219 525 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 CYTH1Q15438 398 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 PDZD4Q76G19 769 aaPredicted RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 STRA8Q7Z7C7 330 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 C10orf107Q8IVU9 208 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 CMASQ8NFW8 434 aaPredicted RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 PCDH19Q8TAB3 1148 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 GDPD5Q8WTR4 605 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 GCNAQ96QF7 691 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 SIK2Q9H0K1 926 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 LHX5Q9H2C1 402 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 ARFGEF1Q9Y6D6 1849 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 KPNA7A9QM74 516 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 TRDMT1O14717 391 aaKnown RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 SNUPNO95149 360 aaKnown RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 RAG1P15918 1043 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 RXRBP28702 533 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 PMF1Q6P1K2 205 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 DNERQ8NFT8 737 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 HTR3CQ8WXA8 447 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 SERPINI1Q99574 410 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 MAGEB5Q9BZ81 275 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 SPATC1LQ9H0A9 340 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 SSU72Q9NP77 194 aaKnown RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 SLC7A8Q9UHI5 535 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 TEX264Q9Y6I9 313 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 AHDC1Q5TGY3 1603 aaPredicted RBP12.23□□□□□ -0.45
MSH6-204ENST00000445503 NHSQ6T4R5 1651 aa12.23□□□□□ -0.45
MSH6-204ENST00000445503 STBD1O95210 358 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ZNF286BP0CG31 522 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 TGM2P21980 687 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ITKQ08881 620 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 IYDQ6PHW0 289 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 BEST2Q8NFU1 509 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 MINDY3Q9H8M7 445 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 PDLIM7Q9NR12 457 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 RNF103O00237 685 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 GOT1P17174 413 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 NUMBP49757 651 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 SLC6A3Q01959 620 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 PDCD2Q16342 344 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms