RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PUM3Q15397 648 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 PFKFB4Q16877 469 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 ZACNQ401N2 412 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 ACSM6Q6P461 480 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 GATAD2AQ86YP4 633 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 SRRM1Q8IYB3 904 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 RSC1A1Q92681 617 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 EID2BQ96D98 161 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 EIF3CQ99613 913 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 ADGRE3Q9BY15 652 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 RNF26Q9BY78 433 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 EPS8L2Q9H6S3 715 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 OBP2BQ9NPH6 170 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 ABHD10Q9NUJ1 306 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 MAFFQ9ULX9 164 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 COMMD10Q9Y6G5 202 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 LGALS16A8MUM7 142 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 ASNA1O43681 348 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 CELA2AP08217 269 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 GALNT1Q10472 559 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 CHAF1AQ13111 956 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 GRM4Q14833 912 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 P3H1Q32P28 736 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 RANBP10Q6VN20 620 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 NRSN1Q8IZ57 195 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 OR52L2PQ8NGH6 319 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 STYXQ8WUJ0 223 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 WDR60Q8WVS4 1066 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 POF1BQ8WVV4 589 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 GLMPQ8WWB7 406 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 KRTAP17-1Q9BYP8 105 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 KCNK9Q9NPC2 374 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 PCDHB2Q9Y5E7 798 aa6.51□□□□□ -1.37
CCDC88A-206ENST00000430086 CCDC187A0A096LP49 1063 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 M0QZQ0 153 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 SYT5O00445 386 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 WDR5P61964 334 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 SLC14A1Q13336 389 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 AWAT1Q58HT5 328 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 GGT6Q6P531 493 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 GALNT16Q8N428 558 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 ENAHQ8N8S7 591 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 C5orf34Q96MH7 638 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 ADARB2Q9NS39 739 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 NFU1Q9UMS0 254 aa6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 UBE2J1Q9Y385 318 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-206ENST00000430086 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 HMGB1P1B2RPK0 211 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 PPP6CO00743 305 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 CYP2D6P10635 497 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 ALADP13716 330 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 SERPINF1P36955 418 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 MRPS21P82921 87 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 SRSF4Q08170 494 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 CEP78Q5JTW2 689 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 KRT27Q7Z3Y8 459 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 TRABD2AQ86V40 505 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 TICAM2Q86XR7 235 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 VPS37AQ8NEZ2 397 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 SLC22A17Q8WUG5 538 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 P2RY11Q96G91 374 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 KATNAL1Q9BW62 490 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 CDCP1Q9H5V8 836 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 FBXO28Q9NVF7 368 aa6.49□□□□□ -1.37
CCDC88A-206ENST00000430086 DNPH1O43598 174 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 PEX14O75381 377 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 EIF3JO75822 258 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 TNFRSF6BO95407 300 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 LDHAP00338 332 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 CSTBP04080 98 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 POLE2P56282 527 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 CBFBQ13951 182 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 CNGA3Q16281 694 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 TRIM60Q495X7 471 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 MEX3CQ5U5Q3 659 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 RINT1Q6NUQ1 792 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 DDB2Q92466 427 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 NPIPB3Q92617 1050 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 PMM1Q92871 262 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 RMDN3Q96TC7 470 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 EFHD1Q9BUP0 239 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 VPS4AQ9UN37 437 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 SCAF8Q9UPN6 1271 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 WDR17Q8IZU2 1322 aa6.48□□□□□ -1.37
CCDC88A-206ENST00000430086 LOC105369274A0A096LPK9 316 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 LOC102723532A0A0G2JNH3 316 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 TTC34A8MYJ7 566 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 RNF8O76064 485 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 CER1O95813 267 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 KLRK1P26718 216 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 EPHB2P29323 1055 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 BLMHQ13867 455 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 ELF2Q15723 593 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 PFKFB3Q16875 520 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 CC2D1BQ5T0F9 858 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 C16orf89Q6UX73 402 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 KYAT3Q6YP21 454 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 NEK8Q86SG6 692 aa6.47□□□□□ -1.37
CCDC88A-206ENST00000430086 OR4N4Q8N0Y3 316 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms