RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 POLR1DQ9Y2S0 133 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 ACOT9Q9Y305 439 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 RBP1P09455 135 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 CD44P16070 742 aaKnown RBP15.79■□□□□ 0.12
PTPRF-206ENST00000429895 VHLP40337 213 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 CCDC92Q53HC0 331 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-206ENST00000429895 ERMARDQ5T6L9 678 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 GPR141Q7Z602 305 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 CCNJLQ8IV13 435 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 LGI2Q8N0V4 545 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-206ENST00000429895 RHBGQ9H310 441 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 VTA1Q9NP79 307 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 KRT75O95678 551 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 TUBP50607 506 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 ATP12AP54707 1039 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 PPM1LQ5SGD2 360 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 SRLQ86TD4 932 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 CDK20Q8IZL9 346 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 TRAPPC12Q8WVT3 735 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 ASZ1Q8WWH4 475 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 SH3GL2Q99962 352 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 SLC40A1Q9NP59 571 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 OSGEPQ9NPF4 335 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 ARHGEF3Q9NR81 526 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 CNTNAP4Q9C0A0 1308 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 DDNO94850 711 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-206ENST00000429895 SREBF1P36956 1147 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 NDST1P52848 882 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 AGKQ53H12 422 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 MACC1Q6ZN28 852 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 TMEM120AQ9BXJ8 343 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 PDGFDQ9GZP0 370 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-206ENST00000429895 PARVBQ9HBI1 364 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 SPG21Q9NZD8 308 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 USP20Q9Y2K6 914 aa15.79■□□□□ 0.12
PTPRF-206ENST00000429895 TRIM25Q14258 630 aaKnown RBP15.78■□□□□ 0.12
PTPRF-206ENST00000429895 MFSD10Q14728 455 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 ZCCHC8Q6NZY4 707 aaKnown RBP15.78■□□□□ 0.12
PTPRF-206ENST00000429895 EPHX4Q8IUS5 362 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 OR8H2Q8N162 312 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SNRNP27Q8WVK2 155 aaKnown RBP15.78■□□□□ 0.12
PTPRF-206ENST00000429895 RAMP2O60895 175 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 CPA3P15088 417 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 PKN1Q16512 942 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 DGKKQ5KSL6 1271 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 TPGS1Q6ZTW0 290 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 TXNRD3Q86VQ6 643 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 TATDN2Q93075 761 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 CARD9Q9H257 536 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 RNF19AQ9NV58 838 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 DPP7Q9UHL4 492 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 AMHP03971 560 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 ERVK-24P63145 666 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SLC39A12Q504Y0 691 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 C3orf20Q8ND61 904 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SPPL2AQ8TCT8 520 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 USP7Q93009 1102 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SEPHS2Q99611 448 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SENP6Q9GZR1 1112 aaPredicted RBP15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SPATC1LQ9H0A9 340 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 TSPAN16Q9UKR8 245 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 RAD54BQ9Y620 910 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SPATA31A5Q5VU36 1347 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 SPATA31A7Q8IWB4 1347 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 WDR27A2RRH5 827 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 DDTLA6NHG4 134 aaPredicted RBP15.78■□□□□ 0.12
PTPRF-206ENST00000429895 HSPA13P48723 471 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 GRIK3Q13003 919 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 MRPS26Q9BYN8 205 aaKnown RBP15.78■□□□□ 0.12
PTPRF-206ENST00000429895 DPY30Q9C005 99 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 ADCY10Q96PN6 1610 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 PPP2R1BP30154 601 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 RIPOR1Q6ZS17 1223 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 FAM228AQ86W67 206 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 CDK5RAP1Q96SZ6 601 aaKnown RBP15.78■□□□□ 0.12
PTPRF-206ENST00000429895 ITGA11Q9UKX5 1188 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 NCKAP1Q9Y2A7 1128 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 PREX2Q70Z35 1606 aa15.78■□□□□ 0.12
PTPRF-206ENST00000429895 TPBGLP0DKB5 382 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 CCR4P51679 360 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 GJC2Q5T442 439 aaPredicted RBP15.77■□□□□ 0.12
PTPRF-206ENST00000429895 RGL4Q8IZJ4 473 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 MAGEB18Q96M61 343 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 TRIM8Q9BZR9 551 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 KANSL3Q9P2N6 904 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 FZD1Q9UP38 647 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 SAC3D1A6NKF1 404 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 RBAK-RBAKDNI3L0D1 243 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 UMPSP11172 480 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 ITGA9Q13797 1035 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 CES3Q6UWW8 571 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 METTL7BQ6UX53 244 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 SLC30A10Q6XR72 485 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 GLT6D1Q7Z4J2 308 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 SCUBE1Q8IWY4 988 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 CYP4Z2PQ8N1L4 340 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 WDR36Q8NI36 951 aaKnown RBP15.77■□□□□ 0.12
PTPRF-206ENST00000429895 SEMA6BQ9H3T3 888 aa15.77■□□□□ 0.12
PTPRF-206ENST00000429895 TET3O43151 1660 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms