RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 BCAP29Q9UHQ4 241 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 TFR2Q9UP52 801 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 ATG7O95352 703 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 PRLRP16471 622 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 ADCY8P40145 1251 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 ELAVL2Q12926 359 aaKnown RBP10.12□□□□□ -0.79
USP54-205ENST00000424265 PPP2R5EQ16537 467 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 ACAD11Q709F0 780 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 CREG2Q8IUH2 290 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 TMEM35BQ8NCS4 154 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 AZIN2Q96A70 460 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 SH2D3AQ9BRG2 576 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP54-205ENST00000424265 PLEKHA5Q9HAU0 1116 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 MLXIPLQ9NP71 852 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 CAPN11Q9UMQ6 739 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 KRIT1O00522 736 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 DGKIO75912 1065 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 HSPA6P17066 643 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 CASP5P51878 434 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 DSTNP60981 165 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 RPS6KA1Q15418 735 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 PRAMEF19Q5SWL8 479 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 RGS9BPQ6ZS82 235 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 LPCAT2Q7L5N7 544 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 KCNK18Q7Z418 384 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 GALNT7Q86SF2 657 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 ZNF677Q86XU0 584 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 DNAJB3Q8WWF6 145 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 APBB2Q92870 758 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 FAM136AQ96C01 138 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 MS4A14Q96JA4 679 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 MRPS26Q9BYN8 205 aaKnown RBP10.12□□□□□ -0.79
USP54-205ENST00000424265 CELF4Q9BZC1 486 aaKnown RBP10.12□□□□□ -0.79
USP54-205ENST00000424265 RAB20Q9NX57 234 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 COL4A5P29400 1685 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 KCNK3O14649 394 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 KRT8P05787 483 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 GLRA2P23416 452 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 BEX3Q00994 111 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 GFPT1Q06210 699 aaPredicted RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 NCOA4Q13772 614 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 KIZQ2M2Z5 673 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 HSDL1Q3SXM5 330 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 EGFLAMQ63HQ2 1017 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 SPARTQ8N0X7 666 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 TERB1Q8NA31 727 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 FARSBQ9NSD9 589 aaKnown RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 GMIPQ9P107 970 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 MYH6P13533 1939 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 FAM170AA1A519 330 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ARHGAP42A6NI28 874 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 GIPC1O14908 333 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 DHX15O43143 795 aaKnown RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 RAD51CO43502 376 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 JAK1P23458 1154 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ZNF362Q5T0B9 420 aaPredicted RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 C1orf146Q5VVC0 180 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 SMYD5Q6GMV2 418 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 CXCL17Q6UXB2 119 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 NECAB2Q7Z6G3 386 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 KIAA0895Q8NCT3 520 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 NPLOC4Q8TAT6 608 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 CRYGNQ8WXF5 182 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ERLEC1Q96DZ1 483 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 HGH1Q9BTY7 390 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 COLEC11Q9BWP8 271 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 AIPL1Q9NZN9 384 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 KIAA1257Q9ULG3 409 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 MYO5AQ9Y4I1 1855 aaKnown RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 BAIAP3O94812 1187 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 VTNP04004 478 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 PGM1P36871 562 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ST13P50502 369 aaKnown RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 CYP24A1Q07973 514 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 COX10Q12887 443 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 CDKAL1Q5VV42 579 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 RNF43Q68DV7 783 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 C3orf62Q6ZUJ4 267 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 GAB3Q8WWW8 586 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 DENND2DQ9H6A0 471 aaPredicted RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 ITGA11Q9UKX5 1188 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ERVK-11Q9UQG0 969 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 PCDHA13Q9Y5I0 950 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ZSCAN5CA6NGD5 496 aaPredicted RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 IDH3BO43837 385 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 KLRC4O43908 158 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ACSL4O60488 711 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 CALB1P05937 261 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 CCNB1P14635 433 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 TMEM161BQ8NDZ6 487 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.11□□□□□ -0.79
USP54-205ENST00000424265 NIF3L1Q9GZT8 377 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 CYP3A43Q9HB55 503 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 MAFFQ9ULX9 164 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 INPP5FQ9Y2H2 1132 aa10.11□□□□□ -0.79
USP54-205ENST00000424265 ZBBXA8MT70 800 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 PGK1P00558 417 aa10.1□□□□□ -0.79
USP54-205ENST00000424265 PCSK1P29120 753 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms