RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 OSBPL2Q9H1P3 480 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 MIOSQ9NXC5 875 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 CLIC5Q9NZA1 410 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SPG21Q9NZD8 308 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 TJP2Q9UDY2 1190 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 XPO7Q9UIA9 1087 aaKnown RBP8.68□□□□□ -1.02
USP54-203ENST00000418501 NRP1O14786 923 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ENDOD1O94919 500 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 CHRM1P11229 460 aaPredicted RBP8.68□□□□□ -1.02
USP54-203ENST00000418501 NEFHP12036 1026 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SLC11A2P49281 568 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 EPHB3P54753 998 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 PABPC1LQ4VXU2 614 aaKnown RBP8.68□□□□□ -1.02
USP54-203ENST00000418501 LLGL2Q6P1M3 1020 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 TAX1BP1Q86VP1 789 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 CCDC13Q8IYE1 715 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 FAM71DQ8N9W8 422 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ALKBH8Q96BT7 664 aaKnown RBP8.68□□□□□ -1.02
USP54-203ENST00000418501 PGM2Q96G03 612 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 HAPLN3Q96S86 360 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 YME1L1Q96TA2 773 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 CYTH2Q99418 400 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 TMBIM4Q9HC24 238 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SEPT10Q9P0V9 454 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SLC24A2Q9UI40 661 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 FBXW11Q9UKB1 542 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 BACE2Q9Y5Z0 518 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SCN10AQ9Y5Y9 1956 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ARHGAP42A6NI28 874 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SRRM3A6NNA2 597 aaPredicted RBP8.68□□□□□ -1.02
USP54-203ENST00000418501 CLDN5O00501 218 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 MGEA5O60502 916 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 FGF19O95750 216 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 INHBAP08476 426 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 KRT15P19012 456 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 HARS2P49590 506 aaKnown RBP8.68□□□□□ -1.02
USP54-203ENST00000418501 TBX4P57082 545 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 AP1B1Q10567 949 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SCAPQ12770 1279 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 GPR17Q13304 367 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 TAZQ16635 292 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 BBS9Q3SYG4 887 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 CCDC38Q502W7 563 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ARMC3Q5W041 872 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SLC9A4Q6AI14 798 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 AADACL2Q6P093 401 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 RFX8Q6ZV50 586 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 RELL1Q8IUW5 271 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 CMTR2Q8IYT2 770 aaKnown RBP8.68□□□□□ -1.02
USP54-203ENST00000418501 ATPAF2Q8N5M1 289 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ATP2A3Q93084 1043 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 HINFPQ9BQA5 517 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 PLCD4Q9BRC7 762 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 RAB6BQ9NRW1 208 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 BFARQ9NZS9 450 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SCML2Q9UQR0 700 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 RALGAPA2Q2PPJ7 1873 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ANXA9O76027 345 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 UPP2O95045 317 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 EPHB2P29323 1055 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 GLUD2P49448 558 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 PSMD5Q16401 504 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ATP13A4Q4VNC1 1196 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 RAB41Q5JT25 222 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 RABGAP1LQ5R372 815 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 PM20D1Q6GTS8 502 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 CCDC149Q6ZUS6 474 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 IQCKQ8N0W5 287 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 HTR3CQ8WXA8 447 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SPATA17Q96L03 361 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 SMOQ99835 787 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 TMEM121Q9BTD3 319 aa8.68□□□□□ -1.02
USP54-203ENST00000418501 ZBBXA8MT70 800 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 ATP2C2O75185 946 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 KRT37O76014 449 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 CXCL10P02778 98 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 CCL23P55773 120 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 PPP2R2AP63151 447 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 NAB1Q13506 487 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 HIBCHQ6NVY1 386 aaPredicted RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 TTC27Q6P3X3 843 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 TRIM42Q8IWZ5 723 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 ANKS4BQ8N8V4 417 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 CSPG4P5Q96PW8 444 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 SMC6Q96SB8 1091 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 NSMCE4AQ9NXX6 385 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 FAM53CQ9NYF3 392 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 LSM7Q9UK45 103 aaKnown RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 ADAM21Q9UKJ8 722 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 AAR2Q9Y312 384 aaKnown RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 CITO14578 2027 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 MEFVO15553 781 aaPredicted RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 RIPK2O43353 540 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 HPDP32754 393 aaPredicted RBP8.67□□□□□ -1.02
USP54-203ENST00000418501 SERPINB9P50453 376 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 SLC5A3P53794 718 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 HDAC4P56524 1084 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 C10orf120Q5SQS8 335 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 ZBED8Q8IZ13 594 aa8.67□□□□□ -1.02
USP54-203ENST00000418501 PLD5Q8N7P1 536 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms