RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 A0A1W2PQ27 194 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 A0A1W2PQ64 194 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 A0A1W2PQH9 124 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 NPC1O15118 1278 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 RARGP13631 454 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 ZNF132P52740 706 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 CAMK2BQ13554 666 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 UNC13DQ70J99 1090 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 SCD5Q86SK9 330 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 TMPRSS6Q8IU80 811 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 TWNKQ96RR1 684 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 EIF2B4Q9UI10 523 aaKnown RBP16.94■□□□□ 0.3
CUX2-202ENST00000397643 DNMT3LQ9UJW3 386 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 PCDHGB2Q9Y5G2 931 aa16.94■□□□□ 0.3
CUX2-202ENST00000397643 FLRT2O43155 660 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 EXOC3O60645 756 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 FAM200BP0CF97 657 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 CMA1P23946 247 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 CASP1P29466 404 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 OXTRP30559 389 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 ASPAP45381 313 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 PLA2G4AP47712 749 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 AP3M2P53677 418 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 RESP18Q5W5W9 173 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 SHC4Q6S5L8 630 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 IL27RAQ6UWB1 636 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 UNC93AQ86WB7 457 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 JAKMIP2Q96AA8 810 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 DHX58Q96C10 678 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 SIPA1Q96FS4 1042 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 PIWIL1Q96J94 861 aaKnown RBP16.93■□□□□ 0.3
CUX2-202ENST00000397643 LRIG1Q96JA1 1093 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 CGNQ9P2M7 1197 aaKnown RBP16.93■□□□□ 0.3
CUX2-202ENST00000397643 CLEC4EQ9ULY5 219 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 TMEM131Q92545 1883 aa16.93■□□□□ 0.3
CUX2-202ENST00000397643 ASH1LQ9NR48 2969 aaKnown RBP16.92■□□□□ 0.3
CUX2-202ENST00000397643 MUC22E2RYF6 1773 aaPredicted RBP16.92■□□□□ 0.3
CUX2-202ENST00000397643 A0A1B0GVT2 93 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 C7P10643 843 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 PRKCHP24723 683 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 ADORA2BP29275 332 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 DLG4P78352 724 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 AMPD3Q01432 767 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 ZNF234Q14588 700 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 ZACNQ401N2 412 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 C10orf120Q5SQS8 335 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 TMEM215Q68D42 235 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 CACUL1Q86Y37 369 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 ZNF276Q8N554 614 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 CRELD1Q96HD1 420 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 HNRNPABQ99729 332 aaKnown RBP16.92■□□□□ 0.3
CUX2-202ENST00000397643 CDC6Q99741 560 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 PNPLA8Q9NP80 782 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 PCDHA5Q9Y5H7 936 aa16.92■□□□□ 0.3
CUX2-202ENST00000397643 A0A087WV48 116 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 TRABD2BA6NFA1 517 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 CLSTN1O94985 981 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 ASS1P00966 412 aaKnown RBP16.91■□□□□ 0.3
CUX2-202ENST00000397643 KIF11P52732 1056 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 CYP4F3Q08477 520 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 INCA1Q0VD86 236 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 PTPRNQ16849 979 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 KNOP1Q1ED39 458 aaKnown RBP16.91■□□□□ 0.3
CUX2-202ENST00000397643 KIF19Q2TAC6 998 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 SPOPLQ6IQ16 392 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 CCDC186Q7Z3E2 898 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 ANKS1BQ7Z6G8 1248 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 RHBDD1Q8TEB9 315 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 SORCS1Q8WY21 1168 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 PRCCQ92733 491 aaPredicted RBP16.91■□□□□ 0.3
CUX2-202ENST00000397643 NUP58Q9BVL2 599 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 BLZF1Q9H2G9 400 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 SLC39A2Q9NP94 309 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 DMAC2Q9NW81 257 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 ELOVL2Q9NXB9 296 aa16.91■□□□□ 0.3
CUX2-202ENST00000397643 SYNCRIPO60506 623 aaKnown RBP16.9■□□□□ 0.3
CUX2-202ENST00000397643 P4HA1P13674 534 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 CSNK1EP49674 416 aaKnown RBP16.9■□□□□ 0.3
CUX2-202ENST00000397643 UBE2HP62256 183 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 EIF4HQ15056 248 aaKnown RBP16.9■□□□□ 0.3
CUX2-202ENST00000397643 SGSM1Q2NKQ1 1148 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 SCUBE3Q8IX30 993 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 PCED1AQ9H1Q7 454 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 C6orf106Q9H6K1 298 aaPredicted RBP16.9■□□□□ 0.3
CUX2-202ENST00000397643 CLIC5Q9NZA1 410 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 NAGPAQ9UK23 515 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.9■□□□□ 0.3
CUX2-202ENST00000397643 ZNF510Q9Y2H8 683 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.9■□□□□ 0.3
CUX2-202ENST00000397643 SNX11Q9Y5W9 270 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 USP3Q9Y6I4 520 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 KNTC1P50748 2209 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 KALRNO60229 2985 aa16.9■□□□□ 0.3
CUX2-202ENST00000397643 FAM149AA5PLN7 773 aa16.89■□□□□ 0.29
CUX2-202ENST00000397643 CORO1AP31146 461 aaKnown RBP16.89■□□□□ 0.29
CUX2-202ENST00000397643 CHKAP35790 457 aa16.89■□□□□ 0.29
CUX2-202ENST00000397643 PSEN1P49768 467 aa16.89■□□□□ 0.29
CUX2-202ENST00000397643 AFF3P51826 1226 aaKnown RBP16.89■□□□□ 0.29
CUX2-202ENST00000397643 SMAD1Q15797 465 aaKnown RBP16.89■□□□□ 0.29
CUX2-202ENST00000397643 C1orf220Q5T0J3 134 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms