RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 NNTQ13423 1086 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 UGP2Q16851 508 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 MARC1Q5VT66 337 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 CCNI2Q6ZMN8 369 aaPredicted RBP8.55□□□□□ -1.04
PTPRD-204ENST00000397606 TFAP2DQ7Z6R9 452 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 PLEKHO2Q8TD55 490 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 TFAP2BQ92481 460 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 NOVA2Q9UNW9 492 aaKnown RBP8.55□□□□□ -1.04
PTPRD-204ENST00000397606 HACD1B0YJ81 288 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 ATP2C2O75185 946 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 LCA5LO95447 670 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 JCHAINP01591 159 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 GABRR2P28476 465 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 HOXA11P31270 313 aaPredicted RBP8.55□□□□□ -1.04
PTPRD-204ENST00000397606 PPARDQ03181 441 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 RAB30Q15771 203 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 RBM23Q86U06 439 aaKnown RBP8.55□□□□□ -1.04
PTPRD-204ENST00000397606 XYLT1Q86Y38 959 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 KLHDC9Q8NEP7 349 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 RAB3IL1Q8TBN0 382 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 SLC9A7Q96T83 725 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 BCO2Q9BYV7 579 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 CIPCQ9C0C6 399 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 ATP13A1Q9HD20 1204 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 IL23AQ9NPF7 189 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 VANGL2Q9ULK5 521 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 ANGPTL3Q9Y5C1 460 aa8.55□□□□□ -1.04
PTPRD-204ENST00000397606 POLBP06746 335 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 RHOAP61586 193 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PMF1Q6P1K2 205 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 LLGL2Q6P1M3 1020 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 MON1BQ7L1V2 547 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 TMEM121Q9BTD3 319 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 SNRNP25Q9BV90 132 aaKnown RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 EPC1Q9H2F5 836 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PPCSQ9HAB8 311 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PTPRHQ9HD43 1115 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PMPCBO75439 489 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PROZP22891 400 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PPP3CCP48454 512 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 SMAD3P84022 425 aaKnown RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 MARCH8Q5T0T0 291 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 AGMOQ6ZNB7 445 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 B4GALNT4Q76KP1 1039 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 TAS2R42Q7RTR8 314 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 RASSF3Q86WH2 238 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 TMEM40Q8WWA1 233 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 VAT1Q99536 393 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 B3GNT5Q9BYG0 378 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 AFF4Q9UHB7 1163 aaKnown RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 SLC30A1Q9Y6M5 507 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PIRO00625 290 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 TSPAN3O60637 253 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 SLC11A1P49279 550 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 SYCP2LQ5T4T6 812 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 MAP3K21Q5TCX8 1036 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 ANKRD20A3Q5VUR7 823 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PPP2R2DQ66LE6 453 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PRSS55Q6UWB4 352 aaPredicted RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 CCNJLQ8IV13 435 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 ANKMY2Q8IV38 441 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PGBD3Q8N328 593 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 SMG8Q8ND04 991 aaKnown RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 TTC8Q8TAM2 541 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 CALML6Q8TD86 181 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 GPR152Q8TDT2 470 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 BORCS6Q96GS4 357 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 CELF6Q96J87 481 aaKnown RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 TRIM56Q9BRZ2 755 aaKnown RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 ZNF670Q9BS34 389 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 VRTNQ9H8Y1 702 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PCDH9Q9HC56 1237 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 RBM22Q9NW64 420 aaKnown RBP eCLIP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 SIX4Q9UIU6 781 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 TRHDEQ9UKU6 1024 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 RCCD1A6NED2 376 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 RASA4BC9J798 803 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 E5RI56 91 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 COPEO14579 308 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 RASA4O43374 803 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 LUC7L3O95232 432 aaKnown RBP8.54□□□□□ -1.04
PTPRD-204ENST00000397606 USP6NLQ92738 828 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 NAT9Q9BTE0 207 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 CAPS2Q9BXY5 557 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 ZNF510Q9Y2H8 683 aa8.54□□□□□ -1.04
PTPRD-204ENST00000397606 PPEF2O14830 753 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 RNASEH1O60930 286 aaKnown RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 SPATA31D3P0C874 917 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 GNGT1P63211 74 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 MAP7D1Q3KQU3 841 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 SPATA31D4Q6ZUB0 917 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 LRRC49Q8IUZ0 686 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 TMEM139Q8IV31 216 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 JOSD2Q8TAC2 188 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 GAS2L1Q99501 681 aaPredicted RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 GPR63Q9BZJ6 419 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 WHRNQ9P202 907 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 NAALADL1Q9UQQ1 740 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 DOCK1Q14185 1865 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 OPHN1O60890 802 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms