RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ZSCAN18Q8TBC5 510 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-202ENST00000394943 ASIC4Q96FT7 647 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 TSGA10Q9BZW7 698 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 KLC2Q9H0B6 622 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 IP6K2Q9UHH9 426 aa7.31□□□□□ -1.24
LIMA1-202ENST00000394943 MRPS23Q9Y3D9 190 aaKnown RBP7.31□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF106Q9H2Y7 1883 aaKnown RBP7.31□□□□□ -1.24
LIMA1-202ENST00000394943 RCCD1A6NED2 376 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 TRDMT1O14717 391 aaKnown RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 SLC9A3R1O14745 358 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 IGFBP4P22692 258 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 RFC1P35251 1148 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 PRKCQQ04759 706 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CBLBQ13191 982 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 FZD5Q13467 585 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 REXO1L1PQ8IX06 675 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 SLC44A3Q8N4M1 653 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 ACSF2Q96CM8 615 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 BTN2A3PQ96KV6 586 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 PCMTD1Q96MG8 357 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 IGFLR1Q9H665 355 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 C8orf33Q9H7E9 229 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 ANLNQ9NQW6 1124 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 NAALADL1Q9UQQ1 740 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 OR51B4Q9Y5P0 310 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CDH23Q9H251 3354 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 SOWAHDA6NJG2 315 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CCP110O43303 1012 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CACNG3O60359 315 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 KRT3P12035 628 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 IBSPP21815 317 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 GBP1P32455 592 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 ARPP19P56211 112 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CYP4F8P98187 520 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 STXBP5Q5T5C0 1151 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 ADGRG2Q8IZP9 1017 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 FGF14Q92915 247 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 WBP2Q969T9 261 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CCDC42Q96M95 316 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.3□□□□□ -1.246e-7■■■■■ 85.5
LIMA1-202ENST00000394943 STAP1Q9ULZ2 295 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 TBC1D30Q9Y2I9 924 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 PAXBP1Q9Y5B6 917 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 RAD54BQ9Y620 910 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 GOLGA6L6A8MZA4 724 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 TRUB2O95900 331 aaKnown RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 L1CAMP32004 1257 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 TAF5Q15542 800 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 HSF5Q4G112 596 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CCDC122Q5T0U0 273 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 TANGO2Q6ICL3 276 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 PARM1Q6UWI2 310 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 BPIFB1Q8TDL5 484 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CLDN23Q96B33 292 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 ALG14Q96F25 216 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 PRDM6Q9NQX0 595 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 METTL5Q9NRN9 209 aaKnown RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 PIGVQ9NUD9 493 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 MYO1AQ9UBC5 1043 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 CNOT8Q9UFF9 292 aaKnown RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 AGO1Q9UL18 857 aaKnown RBP7.3□□□□□ -1.24
LIMA1-202ENST00000394943 LAMA3Q16787 3333 aa7.3□□□□□ -1.24
LIMA1-202ENST00000394943 PSTPIP1O43586 416 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 LRCH4O75427 683 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 LCP1P13796 627 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PSMC3P17980 439 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 KCNA5P22460 613 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 ZNF33AQ06730 810 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 SLC12A1Q13621 1099 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 DPYSQ14117 519 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 TAF3Q5VWG9 929 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 BTBD8Q5XKL5 378 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 TXNDC8Q6A555 127 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PASD1Q8IV76 773 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 ARID3BQ8IVW6 561 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 TPCN2Q8NHX9 752 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 RXFP2Q8WXD0 754 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 VOPP1Q96AW1 172 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PACSIN1Q9BY11 444 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 ATXN3LQ9H3M9 355 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 SALL4Q9UJQ4 1053 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 SORCS3Q9UPU3 1222 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 HEPACAM2A8MVW5 462 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 CHURC1-FNTBB4DL54 471 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PES1O00541 588 aaKnown RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 NPC1O15118 1278 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 ACSL4O60488 711 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 CTNNA1P35221 906 aaKnown RBP7.29□□□□□ -1.24
LIMA1-202ENST00000394943 RGS7P49802 495 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PEX5P50542 639 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 MTF1Q14872 753 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 MS4A13Q5J8X5 152 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 DNAJC24Q6P3W2 148 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PLPP6Q8IY26 295 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 SYNPOQ8N3V7 929 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 GPR152Q8TDT2 470 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 NELL1Q92832 810 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 TTC17Q96AE7 1141 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 HES6Q96HZ4 224 aa7.29□□□□□ -1.24
LIMA1-202ENST00000394943 PRICKLE1Q96MT3 831 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms