RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CMC1Q7Z7K0 106 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 SH3TC2Q8TF17 1288 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 GCNAQ96QF7 691 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 ERAP1Q9NZ08 941 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 DDX60LQ5H9U9 1706 aaKnown RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 KIAA1551Q9HCM1 1747 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 KIF3CO14782 793 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 MAFO75444 373 aaPredicted RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 GM2AP17900 193 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 TGM2P21980 687 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 ATXN1P54253 815 aaKnown RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 PPM1JQ5JR12 505 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 LPCAT4Q643R3 524 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 ARMCX2Q7L311 632 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 AFAP1L2Q8N4X5 818 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 C1orf127Q8N9H9 656 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 CNBD2Q96M20 576 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 KCNK16Q96T55 309 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 TRPV6Q9H1D0 765 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 STAP1Q9ULZ2 295 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 MT-CO1P00395 513 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 SP100P23497 879 aaPredicted RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 GNL1P36915 607 aaPredicted RBP16.63■□□□□ 0.25
PCDH1-203ENST00000394536 CDHR3Q6ZTQ4 885 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 SLC7A14Q8TBB6 771 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 MIPEPQ99797 713 aa16.63■□□□□ 0.25
PCDH1-203ENST00000394536 RARBP10826 455 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 CASP2P42575 452 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 GDPD5Q8WTR4 605 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 HTR3CQ8WXA8 447 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 PDGFDQ9GZP0 370 aaPredicted RBP16.62■□□□□ 0.25
PCDH1-203ENST00000394536 ZNF214Q9UL59 606 aaPredicted RBP16.62■□□□□ 0.25
PCDH1-203ENST00000394536 RGS20O76081 388 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 SLC4A1P02730 911 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 DEUP1Q05D60 604 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 FLOT2Q14254 428 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 RAB6CQ53S08 254 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 WDTC1Q8N5D0 677 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 HDAC11Q96DB2 347 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 EBNA1BP2Q99848 306 aaKnown RBP16.62■□□□□ 0.25
PCDH1-203ENST00000394536 RAB6CQ9H0N0 254 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 FAM96AQ9H5X1 160 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 DTNAQ9Y4J8 743 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 SPDYE16A6NNV3 312 aaPredicted RBP16.62■□□□□ 0.25
PCDH1-203ENST00000394536 EEF2KO00418 725 aaKnown RBP16.62■□□□□ 0.25
PCDH1-203ENST00000394536 MAGEB2O15479 319 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 PGM3O95394 542 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 CSH1P0DML2 217 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 CSH2P0DML3 217 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 RAG1P15918 1043 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 TPI1P60174 286 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 OCRLQ01968 901 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 TNFAIP8L3Q5GJ75 292 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 SPATC1LQ9H0A9 340 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 NRDE2Q9H7Z3 1164 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 STX18Q9P2W9 335 aaKnown RBP16.62■□□□□ 0.25
PCDH1-203ENST00000394536 DCDC2Q9UHG0 476 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 CDY2AQ9Y6F7 541 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 CDY1Q9Y6F8 540 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 NFASCO94856 1347 aa16.62■□□□□ 0.25
PCDH1-203ENST00000394536 CNTNAP1P78357 1384 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 GPR25O00155 361 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 SNUPNO95149 360 aaKnown RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 ZNF286BP0CG31 522 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 PKNOX1P55347 436 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 CA9Q16790 459 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 RALGPS1Q5JS13 557 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 SPDYAQ5MJ70 313 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 RARS2Q5T160 578 aaKnown RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 PPP1R26Q5T8A7 1209 aaPredicted RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 APOBEC3FQ8IUX4 373 aaKnown RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 SLC4A11Q8NBS3 891 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 SUDS3Q9H7L9 328 aaPredicted RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 PCDH18Q9HCL0 1135 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 PLA2G4CQ9UP65 541 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 AFG3L2Q9Y4W6 797 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 RNF103O00237 685 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 FARP2O94887 1054 aaPredicted RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 CCDC130P13994 396 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 TWF2Q6IBS0 349 aaKnown RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 CATSPERGQ6ZRH7 1159 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 C15orf39Q6ZRI6 1047 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 KIAA0319LQ8IZA0 1049 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 DNERQ8NFT8 737 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 OLFM3Q96PB7 478 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 SNTG2Q9NY99 539 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 APPL1Q9UKG1 709 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 PIN4Q9Y237 131 aaKnown RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 TRDMT1O14717 391 aaKnown RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 TP73O15350 636 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 AKAP5P24588 427 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 GCAP28676 217 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 ABL2P42684 1182 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 TMED1Q13445 227 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 DLK2Q6UY11 383 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 C10orf107Q8IVU9 208 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 MPP5Q8N3R9 675 aa16.61■□□□□ 0.25
PCDH1-203ENST00000394536 NDRG1Q92597 394 aaKnown RBP16.61■□□□□ 0.25
PCDH1-203ENST00000394536 CPSF3Q9UKF6 684 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms