RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 GAD2Q05329 585 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 GRSF1Q12849 480 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS28-202ENST00000377348 PTP4A2Q12974 167 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 CCINQ13939 588 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 ZNF571Q7Z3V5 609 aaPredicted RBP13.92□□□□□ -0.18
VPS28-202ENST00000377348 ZDHHC17Q8IUH5 632 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 SFTPA1Q8IWL2 248 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 MSANTD4Q8NCY6 345 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 PRSS33Q8NF86 280 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 FCRL2Q96LA5 508 aaPredicted RBP13.92□□□□□ -0.18
VPS28-202ENST00000377348 TRIM62Q9BVG3 475 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 FAM204AQ9H8W3 233 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 METTL5Q9NRN9 209 aaKnown RBP13.92□□□□□ -0.18
VPS28-202ENST00000377348 TAS2R14Q9NYV8 317 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 PLK2Q9NYY3 685 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 COX16Q9P0S2 106 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 CAPN11Q9UMQ6 739 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 ZNF510Q9Y2H8 683 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 ITIH6Q6UXX5 1313 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 GOLGA6L7A0A1B0GV03 622 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 IRAK2O43187 625 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 HOXC11O43248 304 aaPredicted RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 GALR2O43603 387 aaPredicted RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 TSPAN3O60637 253 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 MOCS2O96007 188 aaPredicted RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 IGLV3-25P01717 112 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 TFE3P19532 575 aaPredicted RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 TNFAIP3P21580 790 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 CASP14P31944 242 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 FLT3P36888 993 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 PRKCIP41743 596 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 NSFP46459 744 aaKnown RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 RPS9P46781 194 aaKnown RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 CDK17Q00537 523 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 KDSRQ06136 332 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 KLHL30Q0D2K2 578 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 GAS6Q14393 721 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 ZC3H12AQ5D1E8 599 aaKnown RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 OTUD1Q5VV17 481 aaPredicted RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 TRNP1Q6NT89 227 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 DNAAF5Q86Y56 855 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 VSTM4Q8IW00 320 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 ZNF397Q8NF99 534 aaPredicted RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 SLC39A13Q96H72 371 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 BBS2Q9BXC9 721 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 ADAM33Q9BZ11 813 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 ADAM22Q9P0K1 906 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 CALCOCO1Q9P1Z2 691 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 XPO7Q9UIA9 1087 aaKnown RBP13.91□□□□□ -0.18
VPS28-202ENST00000377348 TLR6Q9Y2C9 796 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 HCN4Q9Y3Q4 1203 aa13.91□□□□□ -0.18
VPS28-202ENST00000377348 DMDP11532 3685 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 TMCO5BA8MYB1 307 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 TULP3O75386 442 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 TYRP14679 529 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 NOS2P35228 1153 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 SCNN1AP37088 669 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 MATKP42679 507 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 SULT1E1P49888 294 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 ZBED6P86452 979 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 RING1Q06587 406 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 MTAPQ13126 283 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 NME3Q13232 169 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 NNTQ13423 1086 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 EIF4EBP2Q13542 120 aaPredicted RBP13.9□□□□□ -0.18
VPS28-202ENST00000377348 LRRC32Q14392 662 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 TDRD12Q587J7 1177 aaKnown RBP13.9□□□□□ -0.18
VPS28-202ENST00000377348 FYB2Q5VWT5 728 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 NUGGCQ68CJ6 796 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 HGSNATQ68CP4 663 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 SPECC1LQ69YQ0 1117 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 NADSYN1Q6IA69 706 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 PKN3Q6P5Z2 889 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 RFWD3Q6PCD5 774 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 MON1BQ7L1V2 547 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 PHF13Q86YI8 300 aaPredicted RBP13.9□□□□□ -0.18
VPS28-202ENST00000377348 UNC45BQ8IWX7 931 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 ETFBKMTQ8IXQ9 262 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 FAM217AQ8IXS0 508 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 EMC1Q8N766 993 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 CHRDQ9H2X0 955 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 SPATA6Q9NWH7 488 aaPredicted RBP13.9□□□□□ -0.18
VPS28-202ENST00000377348 C2orf42Q9NWW7 574 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 DDIT4Q9NX09 232 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.9□□□□□ -0.18
VPS28-202ENST00000377348 MARK1Q9P0L2 795 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 TMEM59LQ9UK28 342 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 LUC7L2Q9Y383 392 aaKnown RBP13.9□□□□□ -0.18
VPS28-202ENST00000377348 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.9□□□□□ -0.188e-7■■□□□ 13.6
VPS28-202ENST00000377348 CACNA1HO95180 2353 aa13.9□□□□□ -0.18
VPS28-202ENST00000377348 M0QYT0 321 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 DDX3XO00571 662 aaKnown RBP eCLIP13.89□□□□□ -0.196e-7■■□□□ 12.4
VPS28-202ENST00000377348 ACSL4O60488 711 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 RNF40O75150 1001 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 PLEKP08567 350 aaPredicted RBP13.89□□□□□ -0.19
VPS28-202ENST00000377348 DRD1P21728 446 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 SLC6A4P31645 630 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 CHKAP35790 457 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 SGSHP51688 502 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 ATXN1P54253 815 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms