RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 OR5B17Q8NGF7 314 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ZDHHC6Q9H6R6 413 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 RUBCNLQ9H714 662 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 BRD9Q9H8M2 597 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 TRMT6Q9UJA5 497 aaKnown RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ANGPT2O15123 496 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 CCL16O15467 120 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 WASP42768 502 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 TBX2Q13207 712 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 HYIQ5T013 277 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 IRAK1BP1Q5VVH5 260 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SHC3Q92529 594 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ABHD8Q96I13 439 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 IGKV6D-41A0A0C4DH26 115 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ANKRD65E5RJM6 399 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ADCY6O43306 1168 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 TNFSF9P41273 254 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SERPINB4P48594 390 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 TUBP50607 506 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ABCE1P61221 599 aaKnown RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 CUL3Q13618 768 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 PDE1CQ14123 709 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 HNRNPLLQ8WVV9 542 aaKnown RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 C12orf42Q96LP6 360 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 PRMT1Q99873 361 aaKnown RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 KCTD10Q9H3F6 313 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ANLNQ9NQW6 1124 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 DRG1Q9Y295 367 aaKnown RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SF3B1O75533 1304 aaKnown RBP eCLIP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 SOAT2O75908 522 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 HSD17B3P37058 310 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 THOP1P52888 689 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 CCDC149Q6ZUS6 474 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 C4orf32Q8N8J7 132 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 ASPSCR1Q9BZE9 553 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 VANGL2Q9ULK5 521 aa11.92□□□□□ -0.5
SYNE1-204ENST00000367248 MORC2Q9Y6X9 1032 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-204ENST00000367248 WNT7AO00755 349 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 TAF11Q15544 211 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 RASIP1Q5U651 963 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 EFL1Q7Z2Z2 1120 aaKnown RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 E2F7Q96AV8 911 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 FAM167BQ9BTA0 163 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 UNKQ9C0B0 810 aaKnown RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 PCDH9Q9HC56 1237 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 TMEM51Q9NW97 253 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 WWOXQ9NZC7 414 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 C5orf58C9J3I9 102 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 TIMM44O43615 452 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 MIPP30301 263 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 HDAC4P56524 1084 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 PABPC1LQ4VXU2 614 aaKnown RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 FBXL19Q6PCT2 694 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 SERPINA13PQ6UXR4 307 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 CHPFQ8IZ52 775 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 MSL3Q8N5Y2 521 aaKnown RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 WHRNQ9P202 907 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 SMIM35A0A1B0GVV1 85 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 TGFB1I1O43294 461 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 CRTAMO95727 393 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 PTPN7P35236 360 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 CAMK2GQ13555 558 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 SERPINB12Q96P63 405 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 PIH1D1Q9NWS0 290 aaKnown RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 GIT1Q9Y2X7 761 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 BMP6P22004 513 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 AMPD1P23109 780 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 RENBPP51606 427 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 HNRNPH2P55795 449 aaKnown RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 ACAP1Q15027 740 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 WNT8BQ93098 351 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 DCLK3Q9C098 648 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 APPL1Q9UKG1 709 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 FZD9O00144 591 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 AARSP49588 968 aaKnown RBP eCLIP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 ZNF135P52742 658 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 PIGZQ86VD9 579 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 NUP93Q8N1F7 819 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 ING5Q8WYH8 240 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 UGT3A1Q6NUS8 523 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 SLC44A2Q8IWA5 706 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-204ENST00000367248 COLGALT1Q8NBJ5 622 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 ZBTB10Q96DT7 871 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 TBC1D13Q9NVG8 400 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 PLIN4Q96Q06 1357 aa11.91□□□□□ -0.5
SYNE1-204ENST00000367248 SLIT2O94813 1529 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 DARSP14868 501 aaKnown RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 ARF4P18085 180 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 MARSP56192 900 aaKnown RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 USP41Q3LFD5 358 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 WDR93Q6P2C0 686 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 MAB21L3Q8N8X9 362 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 TLR10Q9BXR5 811 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 COPS7BQ9H9Q2 264 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 STOML1Q9UBI4 398 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 CDH9Q9ULB4 789 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 TRAV19A0A0A6YYK7 116 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 GJB6O95452 261 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 TRUB2O95900 331 aaKnown RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 OR1D2P34982 312 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms