RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TLR5O60602 858 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 CXADRP78310 365 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 GRIN1Q05586 938 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 ZKSCAN8Q15776 578 aaPredicted RBP11.8□□□□□ -0.52
RTN3-204ENST00000354497 TAF1BQ53T94 588 aaPredicted RBP11.8□□□□□ -0.52
RTN3-204ENST00000354497 DBX2Q6ZNG2 339 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 HTR3DQ70Z44 454 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 GPR155Q7Z3F1 870 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 ADAT2Q7Z6V5 191 aaKnown RBP11.8□□□□□ -0.52
RTN3-204ENST00000354497 FAM35AQ86V20 835 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 TMPRSS12Q86WS5 348 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 KRT222Q8N1A0 295 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 B3GALNT2Q8NCR0 500 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 UCMAQ8WVF2 138 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 TACO1Q9BSH4 297 aaKnown RBP11.8□□□□□ -0.52
RTN3-204ENST00000354497 MARK1Q9P0L2 795 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 NXF1Q9UBU9 619 aaKnown RBP11.8□□□□□ -0.52
RTN3-204ENST00000354497 SEL1LQ9UBV2 794 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 ANKRD6Q9Y2G4 727 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 SLCO1B1Q9Y6L6 691 aa11.8□□□□□ -0.52
RTN3-204ENST00000354497 MUC22E2RYF6 1773 aaPredicted RBP11.8□□□□□ -0.52
RTN3-204ENST00000354497 URB1O60287 2271 aaKnown RBP11.8□□□□□ -0.52
RTN3-204ENST00000354497 H0Y8X5 98 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 FSBPO95073 299 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 TBX18O95935 607 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 CISD3P0C7P0 127 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 DLATP10515 647 aaKnown RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 IDEP14735 1019 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 GAP43P17677 238 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 LONP1P36776 959 aaKnown RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 SSR1P43307 286 aaKnown RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 TNNT3P45378 269 aaPredicted RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 TUBP50607 506 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 CASP5P51878 434 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 GSCP56915 257 aaPredicted RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 SURF1Q15526 300 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 PTPRNQ16849 979 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 WDR72Q3MJ13 1102 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 ARSIQ5FYB1 569 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 TRAPPC11Q7Z392 1133 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 LSM14AQ8ND56 463 aaKnown RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 STRA6Q9BX79 667 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 C6orf106Q9H6K1 298 aaPredicted RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 TM9SF3Q9HD45 589 aa11.79□□□□□ -0.52
RTN3-204ENST00000354497 DMAP1Q9NPF5 467 aaPredicted RBP11.79□□□□□ -0.52
RTN3-204ENST00000354497 TEX51A0A1B0GUA7 166 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 ZNF233A6NK53 670 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 GOLGA6L6A8MZA4 724 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 CBX4O00257 560 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 MDM4O15151 490 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 TACC1O75410 805 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 AP1G2O75843 785 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 EPHX1P07099 455 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 TNNI1P19237 187 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 PGFP49763 221 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 EMP3P54852 163 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 ARID5AQ03989 594 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 TARDBPQ13148 414 aaKnown RBP eCLIP11.78□□□□□ -0.52
RTN3-204ENST00000354497 GEN1Q17RS7 908 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 SNX30Q5VWJ9 437 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 CBWD2Q8IUF1 395 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 WDR49Q8IV35 697 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 PTCD2Q8WV60 388 aaKnown RBP11.78□□□□□ -0.52
RTN3-204ENST00000354497 JAKMIP2Q96AA8 810 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 DUSP9Q99956 384 aaKnown RBP11.78□□□□□ -0.52
RTN3-204ENST00000354497 KLF16Q9BXK1 252 aaPredicted RBP11.78□□□□□ -0.52
RTN3-204ENST00000354497 FGFBP2Q9BYJ0 223 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 CIPCQ9C0C6 399 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 LHX5Q9H2C1 402 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 KRT82Q9NSB4 513 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 PCDHGA4Q9Y5G9 962 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 SHROOM3Q8TF72 1996 aa11.78□□□□□ -0.52
RTN3-204ENST00000354497 ENC1O14682 589 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 GREM1O60565 184 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 RFPL3O75679 317 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 LDOC1O95751 146 aaPredicted RBP11.77□□□□□ -0.52
RTN3-204ENST00000354497 CST3P01034 146 aaPredicted RBP11.77□□□□□ -0.52
RTN3-204ENST00000354497 ZDHHC11BP0C7U3 371 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 PRKCHP24723 683 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 ATP5C1P36542 298 aaKnown RBP11.77□□□□□ -0.52
RTN3-204ENST00000354497 COPAP53621 1224 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 C21orf59P57076 290 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 DNAJC3Q13217 504 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 TRPC3Q13507 836 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 ZNF234Q14588 700 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 SCARA5Q6ZMJ2 495 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 GATAD2AQ86YP4 633 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 HSCBQ8IWL3 235 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 RDH13Q8NBN7 331 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 C1orf216Q8TAB5 229 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 IGSF8Q969P0 613 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 SMARCD1Q96GM5 515 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 CNDP2Q96KP4 475 aaKnown RBP11.77□□□□□ -0.52
RTN3-204ENST00000354497 TLR8Q9NR97 1041 aaKnown RBP11.77□□□□□ -0.52
RTN3-204ENST00000354497 THAP10Q9P2Z0 257 aaPredicted RBP11.77□□□□□ -0.52
RTN3-204ENST00000354497 DNMT3LQ9UJW3 386 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 NUDT5Q9UKK9 219 aa11.77□□□□□ -0.52
RTN3-204ENST00000354497 CAPN8A6NHC0 703 aa11.77□□□□□ -0.53
RTN3-204ENST00000354497 HMBSP08397 361 aa11.77□□□□□ -0.53
RTN3-204ENST00000354497 CASQ1P31415 396 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms