RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 DAOAP59103 153 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 IFI35P80217 286 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 TLE2Q04725 743 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 FAAP100Q0VG06 881 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 DPYSL3Q14195 570 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 DCAF6Q58WW2 860 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 NPAS4Q8IUM7 802 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 RIBC1Q8N443 379 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 OR10T2Q8NGX3 314 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 NDRG1Q92597 394 aaKnown RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 NT5C3BQ969T7 300 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 SLC2A13Q96QE2 648 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 FAM118BQ9BPY3 351 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 SNRNP25Q9BV90 132 aaKnown RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 ULBP1Q9BZM6 244 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 NRDE2Q9H7Z3 1164 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 RXFP1Q9HBX9 757 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 PNPLA8Q9NP80 782 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 DMAP1Q9NPF5 467 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 DNAJB4Q9UDY4 337 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 C15orf41Q9Y2V0 281 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 NEU2Q9Y3R4 380 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 ZNF638Q14966 1978 aaKnown RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 HHLA1C9JL84 531 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 APOC4-APOC2K7ER74 178 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 NDC80O14777 642 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 APOC2P02655 101 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 ATF2P15336 505 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 TFE3P19532 575 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 ADCY8P40145 1251 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 SULT1E1P49888 294 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 CCNG1P51959 295 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 BNIP1Q12981 228 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 OASLQ15646 514 aaKnown RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 KCTD19Q17RG1 926 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 SPRED3Q2MJR0 410 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 RNF43Q68DV7 783 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 LRRTM3Q86VH5 581 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 SPATA2LQ8IUW3 424 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 APLFQ8IW19 511 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 DCP1BQ8IZD4 617 aaKnown RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 SCML4Q8N228 414 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 ALLCQ8N6M5 410 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 CFAP61Q8NHU2 1237 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 SLC35B2Q8TB61 432 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 CKAP2Q8WWK9 683 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 IRGQQ8WZA9 623 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 ARHGEF2Q92974 986 aaKnown RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 SCLYQ96I15 445 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 RNF157Q96PX1 679 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 MRPL9Q9BYD2 267 aaKnown RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 KLHL14Q9P2G3 628 aa13.29□□□□□ -0.28
CLK3-201ENST00000345005 PRG3Q9Y2Y8 225 aaPredicted RBP13.29□□□□□ -0.28
CLK3-201ENST00000345005 E7ENQ6 273 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 NRP1O14786 923 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 CAPN9O14815 690 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 ZBED1O96006 694 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 IVDP26440 423 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 KLRC2P26717 231 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 CACNA2D1P54289 1103 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 CCL23P55773 120 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 DYNLT1P63172 113 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 OTUD4Q01804 1114 aaKnown RBP13.28□□□□□ -0.28
CLK3-201ENST00000345005 TRIM60Q495X7 471 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 ZC3H12AQ5D1E8 599 aaKnown RBP13.28□□□□□ -0.28
CLK3-201ENST00000345005 SPATA21Q7Z572 469 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 TBC1D1Q86TI0 1168 aaPredicted RBP13.28□□□□□ -0.28
CLK3-201ENST00000345005 PSTKQ8IV42 348 aaKnown RBP13.28□□□□□ -0.28
CLK3-201ENST00000345005 CRIPAKQ8N1N5 446 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 ACTL9Q8TC94 416 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.28□□□□□ -0.28
CLK3-201ENST00000345005 HAUS1Q96CS2 278 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 KLHL29Q96CT2 875 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 ZNF333Q96JL9 665 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 MAGEB18Q96M61 343 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 TMEM209Q96SK2 561 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 NPY6RQ99463 290 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 TMEM175Q9BSA9 504 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 ECT2Q9H8V3 914 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 PCDH18Q9HCL0 1135 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 ARHGEF3Q9NR81 526 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 TXLNGQ9NUQ3 528 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 TMEM30AQ9NV96 361 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 TMLHEQ9NVH6 421 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 NKIRAS1Q9NYS0 192 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 RRN3Q9NYV6 651 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 ADAM28Q9UKQ2 775 aa13.28□□□□□ -0.28
CLK3-201ENST00000345005 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.27□□□□□ -0.28
CLK3-201ENST00000345005 ANP32DO95626 131 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 TTC4O95801 387 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 LTFP02788 710 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 USP17L7P0C7H9 530 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 CYP2C18P33260 490 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 SARNPP82979 210 aaKnown RBP13.27□□□□□ -0.28
CLK3-201ENST00000345005 MMRN1Q13201 1228 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 E2F5Q15329 346 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 TRIP13Q15645 432 aaPredicted RBP13.27□□□□□ -0.28
CLK3-201ENST00000345005 DPYSL2Q16555 572 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 TCTN1Q2MV58 587 aa13.27□□□□□ -0.28
CLK3-201ENST00000345005 PM20D1Q6GTS8 502 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms