RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ADPGKQ9BRR6 497 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 APOBEC2Q9Y235 224 aaKnown RBP23.11■■□□□ 1.29
TRIM28-202ENST00000341753 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.11■■□□□ 1.29
TRIM28-202ENST00000341753 CRHR1P34998 444 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 CRADDP78560 199 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 KRT81Q14533 505 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 TBCCQ15814 346 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 TEDDM1Q5T9Z0 273 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 AAGABQ6PD74 315 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 FAM81AQ8TBF8 368 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 PIWIL2Q8TC59 973 aaKnown RBP23.11■■□□□ 1.29
TRIM28-202ENST00000341753 HAPLN3Q96S86 360 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 SDCBP2Q9H190 292 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 IL1RAPL1Q9NZN1 696 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 CDH22Q9UJ99 828 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 TBC1D30Q9Y2I9 924 aa23.11■■□□□ 1.29
TRIM28-202ENST00000341753 GSRP00390 522 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 ARL2P36404 184 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 SLC1A6P48664 564 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 LARP7Q4G0J3 582 aaKnown RBP eCLIP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 CYP4V2Q6ZWL3 525 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 PLD5Q8N7P1 536 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 FNIP1Q8TF40 1166 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 DNAJC1Q96KC8 554 aaKnown RBP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 C12orf42Q96LP6 360 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 AFG3L2Q9Y4W6 797 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 COMMD3-BMI1R4GMX3 469 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 SSC5DA1L4H1 1573 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 CAPN8A6NHC0 703 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 OATP04181 439 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 N4BP2L1Q5TBK1 243 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 NLGN2Q8NFZ4 835 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 XYLT2Q9H1B5 865 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 DHX33Q9H6R0 707 aaKnown RBP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 BTBD7Q9P203 1132 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 PCDHGB4Q9UN71 923 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 G3BP2Q9UN86 482 aaKnown RBP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 POMPQ9Y244 141 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 PCDHGB5Q9Y5G0 923 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 METTL18O95568 372 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 PABPC4LP0CB38 370 aaKnown RBP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 VAV1P15498 845 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 STXBP2Q15833 593 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 WDR78Q5VTH9 848 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 MBLAC2Q68D91 279 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 FAM43BQ6ZT52 329 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-202ENST00000341753 PHTF2Q8N3S3 785 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 KLC2Q9H0B6 622 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 ZDHHC7Q9NXF8 308 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 EMCNQ9ULC0 261 aa23.1■■□□□ 1.29
TRIM28-202ENST00000341753 M0QYV0 167 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 IRF6O14896 467 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 CREB3O43889 395 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 FAM189A1O60320 539 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 SRGAP2CP0DJJ0 459 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 CD1EP15812 388 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 ARRB2P32121 409 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 OAZ1P54368 228 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 MPP4Q96JB8 637 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 PCYT2Q99447 389 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 SLC4A7Q9Y6M7 1214 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 C19orf81C9J6K1 198 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 CCNT2O60583 730 aaKnown RBP23.09■■□□□ 1.29
TRIM28-202ENST00000341753 FGF3P11487 239 aaPredicted RBP23.09■■□□□ 1.29
TRIM28-202ENST00000341753 USP4Q13107 963 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 TRIM50Q86XT4 487 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 NME8Q8N427 588 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 RNF157Q96PX1 679 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 MAN1C1Q9NR34 630 aa23.09■■□□□ 1.29
TRIM28-202ENST00000341753 TRDMT1O14717 391 aaKnown RBP23.08■■□□□ 1.29
TRIM28-202ENST00000341753 UBA1P22314 1058 aaKnown RBP23.08■■□□□ 1.29
TRIM28-202ENST00000341753 IDH3AP50213 366 aa23.08■■□□□ 1.29
TRIM28-202ENST00000341753 FRMD7Q6ZUT3 714 aa23.08■■□□□ 1.29
TRIM28-202ENST00000341753 ADGRG6Q86SQ4 1221 aa23.08■■□□□ 1.29
TRIM28-202ENST00000341753 GSDMBQ8TAX9 411 aa23.08■■□□□ 1.29
TRIM28-202ENST00000341753 RXFP2Q8WXD0 754 aa23.08■■□□□ 1.29
TRIM28-202ENST00000341753 POLR2AP24928 1970 aaKnown RBP23.08■■□□□ 1.28
TRIM28-202ENST00000341753 BIRC5O15392 142 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 MICAL2O94851 1124 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 ITGAXP20702 1163 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 INHBCP55103 352 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 BCAR1P56945 870 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 FOLH1Q04609 750 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 ZNF534Q76KX8 674 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 CDHR1Q96JP9 859 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 IFT122Q9HBG6 1241 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 ASNSD1Q9NWL6 643 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 HOXC10Q9NYD6 342 aa23.08■■□□□ 1.28
TRIM28-202ENST00000341753 LCTP09848 1927 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 hCG_2014768A0A024R1R8 64 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 PDGFRAP16234 1089 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 VGLL4Q14135 290 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 CA9Q16790 459 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 PDPK2PQ6A1A2 396 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 CASC4Q6P4E1 433 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 C10orf107Q8IVU9 208 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 TFB1MQ8WVM0 346 aaKnown RBP23.07■■□□□ 1.28
TRIM28-202ENST00000341753 SIGLEC10Q96LC7 697 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 CCDC28BQ9BUN5 200 aa23.07■■□□□ 1.28
TRIM28-202ENST00000341753 INPP5FQ9Y2H2 1132 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms