RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CLK1P49759 484 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 FXR1P51114 621 aaKnown RBP eCLIP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 MCL1Q07820 350 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PLCL1Q15111 1095 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 TCEA2Q15560 299 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 KIAA0319Q5VV43 1072 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ZCCHC12Q6PEW1 402 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 LVRNQ6Q4G3 990 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ACDQ96AP0 544 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PLEKHA8Q96JA3 519 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 PLIN2Q99541 437 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 C7orf50Q9BRJ6 194 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 KMT5AQ9NQR1 393 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 SAR1AQ9NR31 198 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 ASAH2Q9NR71 780 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.38□□□□□ -1.87
CSMD3-202ENST00000339701 GMIPQ9P107 970 aa3.38□□□□□ -1.87
CSMD3-202ENST00000339701 GSTA4O15217 222 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PCDH8O95206 1070 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ADH1CP00326 375 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 IL6P05231 212 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 IGKV5-2P06315 115 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ODC1P11926 461 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 NOS2P35228 1153 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HPCAP84074 193 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PTPN12Q05209 780 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CTDSPL2Q05D32 466 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ADCY1Q08828 1119 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PIGHQ14442 188 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 BMT2Q1RMZ1 405 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TMTC4Q5T4D3 741 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CREB3L3Q68CJ9 461 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KLHL35Q6PF15 583 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CYP4Z1Q86W10 505 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CLYBLQ8N0X4 340 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 LRRN4CLQ8ND94 238 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HEXDCQ8WVB3 486 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 QRFPRQ96P65 431 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TRAPPC9Q96Q05 1148 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SECISBP2Q96T21 854 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SENP7Q9BQF6 1050 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 GREM2Q9H772 168 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MGAT4AQ9UM21 535 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CAB39Q9Y376 341 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CLUHO75153 1309 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM114B3SHH9 223 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KPNA5O15131 536 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CTIFO43310 598 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 VHLP40337 213 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 DHPSP49366 369 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CCNHP51946 323 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 VCPP55072 806 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CYP27A1Q02318 531 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HLFQ16534 295 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 DCAF17Q5H9S7 520 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KIAA2013Q8IYS2 634 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PGAP3Q96FM1 320 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 VAT1Q99536 393 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 APOL2Q9BQE5 337 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 COPS4Q9BT78 406 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 H2AFY2Q9P0M6 372 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SUSD2Q9UGT4 822 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF318Q5VUA4 2279 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PDE2AO00408 941 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MED24O75448 989 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CXCL14O95715 111 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 FGGP02679 453 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MSL3P1P0C860 447 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HOXC12P31275 282 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CYP2C18P33260 490 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CASRP41180 1078 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PNPLA4P41247 253 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TSGA10IPQ3SY00 556 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 DCAF6Q58WW2 860 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KIAA1324Q6UXG2 1013 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ARCQ7LC44 396 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 S100A7AQ86SG5 101 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SLC22A9Q8IVM8 553 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 GLYCTKQ8IVS8 523 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RNASE11Q8TAA1 199 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TRPM4Q8TD43 1214 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CYFIP2Q96F07 1278 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 VTA1Q9NP79 307 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM63CQ9P1W3 806 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HCN3Q9P1Z3 774 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 DOCK5Q9H7D0 1870 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SKAP2O75563 359 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SCRN1Q12765 414 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SKIDA1Q1XH10 827 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 NXNQ6DKJ4 435 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ZDHHC17Q8IUH5 632 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RHOT1Q8IXI2 618 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 GPALPP1Q8IXQ4 340 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TAB3Q8N5C8 712 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CLHC1Q8NHS4 586 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SLC26A7Q8TE54 656 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CAPSLQ8WWF8 208 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PRKD2Q9BZL6 878 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SLITRK2Q9H156 845 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms