RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 TTC9BQ8N6N2 239 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 COLEC11Q9BWP8 271 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 NUDT5Q9UKK9 219 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 SHOC2Q9UQ13 582 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 SNX10Q9Y5X0 201 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 TNFRSF10BO14763 440 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 TMEM63AO94886 807 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 FAXCQ5TGI0 409 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 KCNT2Q6UVM3 1135 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 CAPN12Q6ZSI9 719 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 TAC4Q86UU9 113 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 NAT8LQ8N9F0 302 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 ATAD1Q8NBU5 361 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 GPR152Q8TDT2 470 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 IRGQQ8WZA9 623 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 FBXW11Q9UKB1 542 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 PTPRDP23468 1912 aa23.24■■□□□ 1.31
PDLIM2-203ENST00000339162 ZBED8Q8IZ13 594 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 DCP1BQ8IZD4 617 aaKnown RBP23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 PNPLA8Q9NP80 782 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 PSD3Q9NYI0 1048 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 ATP11BQ9Y2G3 1177 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 VWA8A3KMH1 1905 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 RASGRF2O14827 1237 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 SYN3O14994 580 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 ZFXP17010 805 aaPredicted RBP23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 PDIA2Q13087 525 aaKnown RBP23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 FNBP1LQ5T0N5 605 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 AGBL2Q5U5Z8 902 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 PCGF5Q86SE9 256 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 PSTKQ8IV42 348 aaKnown RBP23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 CCDC13Q8IYE1 715 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 CCDC110Q8TBZ0 833 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 DQX1Q8TE96 717 aaKnown RBP23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 WDCPQ9H6R7 721 aa23.23■■□□□ 1.31
PDLIM2-203ENST00000339162 ZNF638Q14966 1978 aaKnown RBP23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 BCLAF3A2AJT9 711 aaKnown RBP23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 EEF2KO00418 725 aaKnown RBP23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 MFSD11O43934 449 aa23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 SOAT2O75908 522 aa23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 YWHAGP61981 247 aaKnown RBP eCLIP23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 IFI35P80217 286 aaPredicted RBP23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 MSS51Q4VC12 460 aa23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 TAS1R1Q7RTX1 841 aa23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 ANKMY2Q8IV38 441 aa23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 TP53INP2Q8IXH6 220 aa23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 TKTL2Q9H0I9 626 aa23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 XPO7Q9UIA9 1087 aaKnown RBP23.22■■□□□ 1.31
PDLIM2-203ENST00000339162 H3BRJ5 948 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 CXCL10P02778 98 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 GALTP07902 379 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 ACTN2P35609 894 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 HIF1AQ16665 826 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 FUT10Q6P4F1 479 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RSPO2Q6UXX9 243 aaPredicted RBP23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RFX8Q6ZV50 586 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 BCL7CQ8WUZ0 217 aaPredicted RBP23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 PGAP3Q96FM1 320 aaPredicted RBP23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 LGMNQ99538 433 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 FOXP3Q9BZS1 431 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RAB6BQ9NRW1 208 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 LAMA2P24043 3122 aaKnown RBP23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 ERICH4A6NGS2 130 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RTP2Q5QGT7 225 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 KDM7AQ6ZMT4 941 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RELL1Q8IUW5 271 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RNF34Q969K3 372 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 SLC9A7Q96T83 725 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 CAPS2Q9BXY5 557 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 NMUR1Q9HB89 426 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RCOR3Q9P2K3 495 aaPredicted RBP23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 CTNNAL1Q9UBT7 734 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 SFMBT1Q9UHJ3 866 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 SLC27A5Q9Y2P5 690 aa23.21■■□□□ 1.31
PDLIM2-203ENST00000339162 RGS16O15492 202 aaPredicted RBP23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 NR2C2P49116 596 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 GUCY1A3Q02108 690 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 SLC45A4Q5BKX6 768 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 CENPUQ71F23 418 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 SCD5Q86SK9 330 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 NTAN1Q96AB6 310 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 WBP1LQ9NX94 342 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 SF3B1O75533 1304 aaKnown RBP eCLIP23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 CXCR3P49682 368 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 AUHQ13825 339 aaKnown RBP23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 MRPL58Q14197 206 aaKnown RBP23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 NFE2Q16621 373 aaPredicted RBP23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 BTBD8Q5XKL5 378 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 ZNF280DQ6N043 979 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 TMCO2Q7Z6W1 182 aaPredicted RBP23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 CDKL3Q8IVW4 592 aaPredicted RBP23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 RRN3Q9NYV6 651 aa23.2■■□□□ 1.3
PDLIM2-203ENST00000339162 MSI1O43347 362 aaKnown RBP23.19■■□□□ 1.3
PDLIM2-203ENST00000339162 F9P00740 461 aa23.19■■□□□ 1.3
PDLIM2-203ENST00000339162 CPB1P15086 417 aa23.19■■□□□ 1.3
PDLIM2-203ENST00000339162 FGFR3P22607 806 aa23.19■■□□□ 1.3
PDLIM2-203ENST00000339162 USP46P62068 366 aa23.19■■□□□ 1.3
PDLIM2-203ENST00000339162 DPYSQ14117 519 aa23.19■■□□□ 1.3
PDLIM2-203ENST00000339162 ARL13BQ3SXY8 428 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms