RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CXCR3P49682 368 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 PLTPP55058 493 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 HTRA4P83105 476 aaPredicted RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 DSG1Q02413 1049 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 GBE1Q04446 702 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TAF10Q12962 218 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 PTK6Q13882 451 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 CASP8Q14790 479 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 RASIP1Q5U651 963 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 DENND5BQ6ZUT9 1274 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 GSTA5Q7RTV2 222 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 MAP7D3Q8IWC1 876 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 VPS52Q8N1B4 723 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TAB3Q8N5C8 712 aaPredicted RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 FBXO25Q8TCJ0 367 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 NKD2Q969F2 451 aaPredicted RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 FBXO32Q969P5 355 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 FAF2Q96CS3 445 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 ZNF670Q9BS34 389 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 ZBED2Q9BTP6 218 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 HERC2P3Q9BVR0 1158 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 MAK16Q9BXY0 300 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 ZDHHC18Q9NUE0 388 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 ASIC3Q9UHC3 531 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 XPO7Q9UIA9 1087 aaKnown RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 RASAL2Q9UJF2 1139 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 FBXW11Q9UKB1 542 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 MAGED2Q9UNF1 606 aaPredicted RBP4.3□□□□□ -1.72
MCF2-201ENST00000338585 SCML2Q9UQR0 700 aa4.3□□□□□ -1.72
MCF2-201ENST00000338585 PLXNA3P51805 1871 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SLC38A8A6NNN8 435 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SGK1O00141 431 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 MAP2K7O14733 419 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 IRAK2O43187 625 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ARHGEF15O94989 841 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 GAS8O95995 478 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 IFNB1P01574 187 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 KRT14P02533 472 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SPATA31D3P0C874 917 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 RBP3P10745 1247 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 KLRC2P26717 231 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 YWHAQP27348 245 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 CA8P35219 290 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 EIF3EP60228 445 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 SLC10A2Q12908 348 aaPredicted RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 EIF4EBP2Q13542 120 aaPredicted RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 CUL1Q13616 776 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 TFDP2Q14188 446 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 NOMO1Q15155 1222 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 MAP9Q49MG5 647 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 UBAP2Q5T6F2 1119 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 NCBP2-AS2Q69YL0 99 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SLC9A4Q6AI14 798 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SPATA31D4Q6ZUB0 917 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 DDX53Q86TM3 631 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 MON1AQ86VX9 555 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 HERC6Q8IVU3 1022 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 UNC45BQ8IWX7 931 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 TP53INP2Q8IXH6 220 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 FIBCD1Q8N539 461 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ALLCQ8N6M5 410 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 KLHL23Q8NBE8 558 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 RNF139Q8WU17 664 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 P3H4Q92791 437 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 RNF34Q969K3 372 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 PGAP3Q96FM1 320 aaPredicted RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 PWWP2AQ96N64 755 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 NCAPGQ9BPX3 1015 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 TKTL2Q9H0I9 626 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SMOC2Q9H3U7 446 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 FBXO44Q9H4M3 255 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 WDCPQ9H6R7 721 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 CYP4F11Q9HBI6 524 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ARHGEF4Q9NR80 690 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 FAM114A2Q9NRY5 505 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 HOMER3Q9NSC5 361 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ABCC13Q9NSE7 274 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 IL37Q9NZH6 218 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 NR2E3Q9Y5X4 410 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 GREB1Q4ZG55 1949 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 FAM92AA1XBS5 289 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 GRXCR1A8MXD5 290 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 TEX28O15482 410 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ABLIM3O94929 683 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 URODP06132 367 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ITGAVP06756 1048 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 MYOGP15173 224 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ATF2P15336 505 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ATP2A2P16615 1042 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 ADCY8P40145 1251 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 DRG2P55039 364 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 RPL10AP62906 217 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 SCAPQ12770 1279 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SMARCB1Q12824 385 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SEMA3BQ13214 749 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 EFHC2Q5JST6 749 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 FAM109BQ6ICB4 259 aaPredicted RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 EMBQ6PCB8 327 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 DRICH1Q6PGQ1 229 aaPredicted RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms