RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 HAPLN3Q96S86 360 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 HEMGNQ9BXL5 484 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 DHX35Q9H5Z1 703 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 ENTPD7Q9NQZ7 604 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 GPATCH2LQ9NWQ4 482 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 UXTQ9UBK9 157 aaPredicted RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 FEZ2Q9UHY8 353 aaPredicted RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 TLR6Q9Y2C9 796 aa15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 R3HDM2Q9Y2K5 976 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-202ENST00000334448 ZNF840PA6NDX5 716 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 KCNU1A8MYU2 1149 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 H3BNC9 293 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 LIASO43766 372 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 CST8O60676 142 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 GLUD1P00367 558 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 POU2F2P09086 479 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 H2AFXP16104 143 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 ZFXP17010 805 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 TGM2P21980 687 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 HOXA9P31269 272 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 CCR1P32246 355 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 PTGIRP43119 386 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 KPNA1P52294 538 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 TWF1Q12792 350 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 TRIP4Q15650 581 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 RAB30Q15771 203 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 ANKRD20A8PQ5CZ79 823 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 SYDE1Q6ZW31 735 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 ADAT2Q7Z6V5 191 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 KLHL7Q8IXQ5 586 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 PQLC3Q8N755 202 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 STKLD1Q8NE28 680 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 PCDH19Q8TAB3 1148 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 ADAM32Q8TC27 787 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 PNKPQ96T60 521 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 CALN1Q9BXU9 219 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 LMAN2LQ9H0V9 348 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 WDCPQ9H6R7 721 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 ALG13Q9NP73 1137 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 ANLNQ9NQW6 1124 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 AMACRQ9UHK6 382 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 YBX2Q9Y2T7 364 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 HBS1LQ9Y450 684 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 GREB1Q4ZG55 1949 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 PLXNA4Q9HCM2 1894 aa15.48■□□□□ 0.07
CCDC88C-202ENST00000334448 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 HIDE1A8MVS5 230 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 GRXCR1A8MXD5 290 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 H3BRJ5 948 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 GRM6O15303 877 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 TLR5O60602 858 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 PAPLNO95428 1278 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 RHOXF2BP0C7M4 288 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 MYOGP15173 224 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 HOXC13P31276 330 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 BMP8BP34820 402 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 ARL4AP40617 200 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 CLCN4P51793 760 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 DR1Q01658 176 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 DPYSQ14117 519 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 BRD3Q15059 726 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 OASLQ15646 514 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 MANEALQ5VSG8 457 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 CCDC137Q6PK04 289 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 DNAJB7Q7Z6W7 309 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 RFX6Q8HWS3 928 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 PLD5Q8N7P1 536 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 KREMEN2Q8NCW0 462 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 GRK7Q8WTQ7 553 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 FCRL2Q96LA5 508 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 RHOXF2Q9BQY4 288 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 PARD6BQ9BYG5 372 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 TKTL2Q9H0I9 626 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 PLEKHA4Q9H4M7 779 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 GDF3Q9NR23 364 aa15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 CWC15Q9P013 229 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 DMGDHQ9UI17 866 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 DRG1Q9Y295 367 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-202ENST00000334448 MYO16Q9Y6X6 1858 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 CCDC151A5D8V7 595 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 APOL1O14791 398 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 HEXIM1O94992 359 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 OLFM2O95897 454 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 ITGAVP06756 1048 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 NR2C2P49116 596 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 DRG2P55039 364 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 VCPP55072 806 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 LMNB2Q03252 620 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 MMRN1Q13201 1228 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 NOMO1Q15155 1222 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 ARTNQ5T4W7 220 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 PLPP4Q5VZY2 271 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 KAZNQ674X7 775 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 SPRED2Q7Z698 418 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 JAMLQ86YT9 394 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 ATL2Q8NHH9 583 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 C1orf54Q8WWF1 131 aa15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.46■□□□□ 0.07
CCDC88C-202ENST00000334448 C1orf74Q96LT6 269 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms