RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LOC102723532A0A0G2JNH3 316 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 TARM1B6A8C7 271 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 H3BNC9 293 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 IPO5O00410 1097 aaKnown RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 AKAP8O43823 692 aaKnown RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 EXOC3O60645 756 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 CER1O95813 267 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 MT-CO3P00414 261 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 APEHP13798 732 aaKnown RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 GYS1P13807 737 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 DUSP1P28562 367 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 PPM1FP49593 454 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 RENBPP51606 427 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 COPB1P53618 953 aaKnown RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 PNLIPRP1P54315 467 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 ELLP55199 621 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 PPFIA1Q13136 1202 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 BTBD16Q32M84 506 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 TMEM95Q3KNT9 176 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 ZNF362Q5T0B9 420 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 TTC22Q5TAA0 569 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 STRIP1Q5VSL9 837 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 SUMO4Q6EEV6 95 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 JMJD6Q6NYC1 403 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 OR4N4Q8N0Y3 316 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 MYRIPQ8NFW9 859 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 OR52L2PQ8NGH6 319 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 OR1N1Q8NGS0 311 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 OR6Y1Q8NGX8 325 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 PPM1EQ8WY54 764 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 CPT1BQ92523 772 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 RUBCNQ92622 972 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 NELL1Q92832 810 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 TBC1D20Q96BZ9 403 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 SDCCAG3Q96C92 435 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 REPS1Q96D71 796 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 HS6ST2Q96MM7 605 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 POLR3GLQ9BT43 218 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 TMPRSS5Q9H3S3 457 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 ELAC1Q9H777 363 aaKnown RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 MLXIPQ9HAP2 919 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 IL17RBQ9NRM6 502 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 SH3BP4Q9P0V3 963 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 KIF17Q9P2E2 1029 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 ARPP21Q9UBL0 812 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 SRP68Q9UHB9 627 aaKnown RBP3.84□□□□□ -1.79
HMGB1-201ENST00000326004 ZNHIT2Q9UHR6 403 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 ADAM21Q9UKJ8 722 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 SPATA31A1Q5TZJ5 1347 aa3.84□□□□□ -1.79
HMGB1-201ENST00000326004 CCDC187A0A096LP49 1063 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 POC1B-GALNT4F8VUJ3 575 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 UBE2Q2LH0YL09 131 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 NKX2-8O15522 239 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 PRAMEF2O60811 474 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 PPP6R2O75170 966 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 FAM155BO75949 473 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 C1RP00736 705 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 MBPP02686 304 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 CHRM5P08912 532 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 HSD3B1P14060 373 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 GALNSP34059 522 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 THBS4P35443 961 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 MCM2P49736 904 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 CLK3P49761 638 aaKnown RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 JAK3P52333 1124 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 SF3A3Q12874 501 aaKnown RBP eCLIP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 LARS2Q15031 903 aaKnown RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 RPS6KA2Q15349 733 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 TIGD6Q17RP2 521 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 AAK1Q2M2I8 961 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 TBRG1Q3YBR2 411 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 ZNF569Q5MCW4 686 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 VSTM1Q6UX27 236 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 SERPINA13PQ6UXR4 307 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 AMIGO2Q86SJ2 522 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 ZNF354CQ86Y25 554 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 ANKRD18AQ8IVF6 992 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 SMAP1Q8IYB5 467 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 CPXCR1Q8N123 301 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 GALNT4Q8N4A0 578 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 MAFAQ8NHW3 353 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 SCAMP5Q8TAC9 235 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 SPPL3Q8TCT6 385 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 ADAMTS18Q8TE60 1221 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 HMGB4Q8WW32 186 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 THAP4Q8WY91 577 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 NPIPB3Q92617 1050 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 KAZALD1Q96I82 304 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 REXO5Q96IC2 774 aaKnown RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 HIC2Q96JB3 615 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 CCDC17Q96LX7 622 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 TRAPPC9Q96Q05 1148 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 MACROD1Q9BQ69 325 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 FAM167BQ9BTA0 163 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 VPS16Q9H269 839 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 CDCP1Q9H5V8 836 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 CCDC134Q9H6E4 229 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 SEPSECSQ9HD40 501 aaKnown RBP3.83□□□□□ -1.8
HMGB1-201ENST00000326004 ABHD10Q9NUJ1 306 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 LIN7CQ9NUP9 197 aaKnown RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms