RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 TINF2Q9BSI4 451 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 VTA1Q9NP79 307 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 CHCHD3Q9NX63 227 aaKnown RBP16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 HESX1Q9UBX0 185 aa16.1■□□□□ 0.17
SHROOM1-201ENST00000319854 MYO18AQ92614 2054 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 CYP2C9P11712 490 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 ZNF143P52747 638 aaPredicted RBP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 ROR1Q01973 937 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 POLNQ7Z5Q5 900 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 TDRPQ86YL5 185 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 TMEM40Q8WWA1 233 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 MCRS1Q96EZ8 462 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 FAM161BQ96MY7 647 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 DRG1Q9Y295 367 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 CLUHO75153 1309 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 TROVE2P10155 538 aaKnown RBP eCLIP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 ESRRAP11474 423 aaPredicted RBP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 ACAT1P24752 427 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 PGM1P36871 562 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 GRIA2P42262 883 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 ARL4CP56559 192 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 CCDC14Q49A88 953 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 LDLRAD1Q5T700 205 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 PPIL6Q8IXY8 311 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 TCP10LQ8TDR4 215 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 SKA1Q96BD8 255 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 FAM149B1Q96BN6 582 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 FAF2Q96CS3 445 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 MS4A4AQ96JQ5 239 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 NR1H4Q96RI1 486 aaPredicted RBP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 CYTH2Q99418 400 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 TTC1Q99614 292 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 CNPY3Q9BT09 278 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 TMEM120AQ9BXJ8 343 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 DHX35Q9H5Z1 703 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 SBF1O95248 1867 aa16.09■□□□□ 0.17
SHROOM1-201ENST00000319854 C2CD4BA6NLJ0 364 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 APRTP07741 180 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 RARBP10826 455 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 ANPEPP15144 967 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 SDC4P31431 198 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 ZBTB16Q05516 673 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 LSAMPQ13449 338 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 CTAGE3PQ8IX95 158 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 CCDC110Q8TBZ0 833 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 UPF1Q92900 1129 aaKnown RBP eCLIP16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 WDR83Q9BRX9 315 aaKnown RBP16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 CEP41Q9BYV8 373 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 GALNT8Q9NY28 637 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 ATXN10Q9UBB4 475 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 ITGA11Q9UKX5 1188 aa16.08■□□□□ 0.17
SHROOM1-201ENST00000319854 SIP14410 1827 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 HNRNPCL1O60812 293 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 ELK3P41970 407 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 ARFIP2P53365 341 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 DPYSL3Q14195 570 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 HIC1Q14526 733 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 GSTA3Q16772 222 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 MDH1BQ5I0G3 518 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 PDIK1LQ8N165 341 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 TMPRSS4Q9NRS4 437 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 DNAAF2Q9NVR5 837 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 APOC4-APOC2K7ER74 178 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 APOC2P02655 101 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 RBL1P28749 1068 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 ATICP31939 592 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 BCAR1P56945 870 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 SEPT7Q16181 437 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 SLC25A41Q8N5S1 370 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 HAPLN3Q96S86 360 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 PTPN18Q99952 460 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 ECSITQ9BQ95 431 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 EBF3Q9H4W6 596 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 CYP3A43Q9HB55 503 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 MFHAS1Q9Y4C4 1052 aa16.08■□□□□ 0.16
SHROOM1-201ENST00000319854 LAMA3Q16787 3333 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 ALOX15BO15296 676 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 PAPSS1O43252 624 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 TREHO43280 583 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 FAM155BO75949 473 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 OR6B1O95007 311 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 BAG2O95816 211 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 SMIM10L2AP0DMW4 78 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 SMIM10L2BP0DMW5 78 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 CCL14Q16627 93 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 DUSP28Q4G0W2 176 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 BSPRYQ5W0U4 402 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 DRICH1Q6PGQ1 229 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 LCLAT1Q6UWP7 414 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 ALYREFQ86V81 257 aaKnown RBP16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 LINC01465Q8N7H1 131 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 CMASQ8NFW8 434 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 CFAP61Q8NHU2 1237 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 PANX3Q96QZ0 392 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 GCOM2Q9BZD3 368 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 KATNBL1Q9H079 304 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 MANSC1Q9H8J5 431 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 PPM1HQ9ULR3 514 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 SHOC2Q9UQ13 582 aa16.07■□□□□ 0.16
SHROOM1-201ENST00000319854 ANK1P16157 1881 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms