RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ADRA1DP25100 572 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 PTPN7P35236 360 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 BMPR2Q13873 1038 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 ACCSLQ4AC99 568 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 SPOCD1Q6ZMY3 1216 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 ZNF662Q6ZS27 426 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 CCDC149Q6ZUS6 474 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 DHFR2Q86XF0 187 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 SLC7A14Q8TBB6 771 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 USP33Q8TEY7 942 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 SLC20A1Q8WUM9 679 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 CD274Q9NZQ7 290 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 TUBGCP4Q9UGJ1 667 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 FRMPD4Q14CM0 1322 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 CELF2O95319 508 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 PROCP04070 461 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 CYP3A4P08684 503 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 TGFB3P10600 412 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 VEGFAP15692 232 aaPredicted RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 ALDH1A3P47895 512 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 LRRC74AQ0VAA2 488 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 AGKQ53H12 422 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 SVOPQ8N4V2 548 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 TSPAN14Q8NG11 270 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 TFB1MQ8WVM0 346 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 RORBQ92753 470 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 DEPDC7Q96QD5 511 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 SRPK1Q96SB4 655 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 CCDC28BQ9BUN5 200 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 BDH2Q9BUT1 245 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 REXO4Q9GZR2 422 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 SPATC1LQ9H0A9 340 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 COPS7BQ9H9Q2 264 aaPredicted RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 CAMTA1Q9Y6Y1 1673 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 EML1O00423 815 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 VDRP11473 427 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 ANPEPP15144 967 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 RRP1BQ14684 758 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 DHDDSQ86SQ9 333 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 CDH24Q86UP0 819 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 SLC47A2Q86VL8 602 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 DHRSXQ8N5I4 330 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 AKT1S1Q96B36 256 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 NCKIPSDQ9NZQ3 722 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 FAM198AQ9UFP1 575 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 NUDT17P0C025 328 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 RARAP10276 462 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 NNMTP40261 264 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 OAZ1P54368 228 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 MTTPP55157 894 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 ARHGAP17Q68EM7 881 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 RBM44Q6ZP01 1051 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 WDR49Q8IV35 697 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 CAPSLQ8WWF8 208 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 SPIRE2Q8WWL2 714 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 EZH1Q92800 747 aaPredicted RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 HES6Q96HZ4 224 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 C9orf16Q9BUW7 83 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 TRPC7Q9HCX4 862 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 H2AFY2Q9P0M6 372 aaPredicted RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 RUVBL2Q9Y230 463 aaKnown RBP11.81□□□□□ -0.52
VPS39-201ENST00000318006 AK5Q9Y6K8 562 aa11.81□□□□□ -0.52
VPS39-201ENST00000318006 A0A0U1RQJ8 604 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 UBDO15205 165 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 WASHC5Q12768 1159 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 LACTB2Q53H82 288 aaPredicted RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 LINC00523Q86TU6 105 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 ARHGEF19Q8IW93 802 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 C19orf18Q8NEA5 215 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 ASIC4Q96FT7 647 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 CDRT15Q96T59 188 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 EURLQ9NYK6 297 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 TMEM191CA6NGB0 347 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 PLSCR1O15162 318 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 STX7O15400 261 aaKnown RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 SHBGP04278 402 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 SLC12A3P55017 1021 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 SOX10P56693 466 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 IL5RAQ01344 420 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 ITGA9Q13797 1035 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 GLRA4Q5JXX5 417 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 CENPLQ8N0S6 344 aaPredicted RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 CROTQ9UKG9 612 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 NFAT5O94916 1531 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 NR5A2O00482 541 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 HIST1H2AGP0C0S8 130 aaPredicted RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 STAG3L1P0CL83 205 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 HIST1H2ADP20671 130 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 AMPD2Q01433 879 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 PRKAA1Q13131 559 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 TRIP4Q15650 581 aaPredicted RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 DCP1BQ8IZD4 617 aaKnown RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 VPS37AQ8NEZ2 397 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 DGCR14Q96DF8 476 aaKnown RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 ZNF333Q96JL9 665 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 HIST1H2AHQ96KK5 128 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 HIST1H2AJQ99878 128 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 DDX50Q9BQ39 737 aaKnown RBP11.8□□□□□ -0.52
VPS39-201ENST00000318006 H2AFJQ9BTM1 129 aa11.8□□□□□ -0.52
VPS39-201ENST00000318006 C6orf62Q9GZU0 229 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms