RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 C6orf118Q5T5N4 469 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 RNF43Q68DV7 783 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 PRUNE1Q86TP1 453 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 ECHDC2Q86YB7 292 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 HACE1Q8IYU2 909 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 KIF2BQ8N4N8 673 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 STKLD1Q8NE28 680 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 PAWRQ96IZ0 340 aaKnown RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 CFAP57Q96MR6 1250 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 HAPLN3Q96S86 360 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 CNPY3Q9BT09 278 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 MIS12Q9H081 205 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 STMN4Q9H169 189 aaPredicted RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 LRMDAQ9H2I8 198 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 DDX56Q9NY93 547 aaKnown RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 RASAL2Q9UJF2 1139 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 ZMYND8Q9ULU4 1186 aaPredicted RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 MAGEA13PA6NCF6 341 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 F8W810 466 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 I3L4J1 428 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 DPYSL4O14531 572 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 PDGFRAP16234 1089 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 PTPN1P18031 435 aaKnown RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 GSTT1P30711 240 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 PLTPP55058 493 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 INHBCP55103 352 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 TIGD5Q53EQ6 642 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 UBAP2Q5T6F2 1119 aaKnown RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 UTP4Q969X6 686 aaKnown RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 RUNDC3BQ96NL0 473 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 HNRNPABQ99729 332 aaKnown RBP13.54□□□□□ -0.24
CPNE1-201ENST00000317677 RTP3Q9BQQ7 232 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 EPB41L4BQ9H329 900 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 TXLNGQ9NUQ3 528 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 TMEM30AQ9NV96 361 aa13.54□□□□□ -0.24
CPNE1-201ENST00000317677 LIASO43766 372 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 KDELR1P24390 212 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 ARSEP51690 589 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 RABGGTBP53611 331 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 PTK6Q13882 451 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 ACAP1Q15027 740 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 TRIP13Q15645 432 aaPredicted RBP13.53□□□□□ -0.24
CPNE1-201ENST00000317677 TFDP3Q5H9I0 405 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 SH2D4BQ5SQS7 431 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 ZFYVE27Q5T4F4 411 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 FITM2Q8N6M3 262 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 GLIS1Q8NBF1 620 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 CMASQ8NFW8 434 aaPredicted RBP13.53□□□□□ -0.24
CPNE1-201ENST00000317677 INPP5DQ92835 1189 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 GATA6Q92908 595 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 PRMT1Q99873 361 aaKnown RBP13.53□□□□□ -0.24
CPNE1-201ENST00000317677 C11orf84Q9BUA3 381 aaPredicted RBP13.53□□□□□ -0.24
CPNE1-201ENST00000317677 LRRC4CQ9HCJ2 640 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 PREBQ9HCU5 417 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 DDX43Q9NXZ2 648 aaKnown RBP13.53□□□□□ -0.24
CPNE1-201ENST00000317677 DNPEPQ9ULA0 475 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 USP18Q9UMW8 372 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 SQORQ9Y6N5 450 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 NLRC5Q86WI3 1866 aa13.53□□□□□ -0.24
CPNE1-201ENST00000317677 ATP6V1G1O75348 118 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 ENDOD1O94919 500 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 SHBGP04278 402 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 ITGB1P05556 798 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 SKIP12755 728 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 LCP1P13796 627 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 BRCC3P46736 316 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 PTDSS1P48651 473 aaKnown RBP13.52□□□□□ -0.24
CPNE1-201ENST00000317677 ADCY1Q08828 1119 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 TMED1Q13445 227 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 LSAMPQ13449 338 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 GPNMBQ14956 572 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 CDO1Q16878 200 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 PAN2Q504Q3 1202 aaKnown RBP13.52□□□□□ -0.24
CPNE1-201ENST00000317677 MDH1BQ5I0G3 518 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 PIGZQ86VD9 579 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 PHC3Q8NDX5 983 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 NDRG1Q92597 394 aaKnown RBP13.52□□□□□ -0.24
CPNE1-201ENST00000317677 ART4Q93070 314 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 HAUS1Q96CS2 278 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 TNIP3Q96KP6 325 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 FMO2Q99518 471 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 PABPC3Q9H361 631 aaKnown RBP13.52□□□□□ -0.24
CPNE1-201ENST00000317677 C11orf49Q9H6J7 331 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 STARD7Q9NQZ5 370 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 ASNSD1Q9NWL6 643 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 INPP5FQ9Y2H2 1132 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 COMMD3-BMI1R4GMX3 469 aa13.52□□□□□ -0.24
CPNE1-201ENST00000317677 MYBPHLA2RUH7 354 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 C9IYK1 514 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 ARVCFO00192 962 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 XPO1O14980 1071 aaKnown RBP13.52□□□□□ -0.25
CPNE1-201ENST00000317677 INPPL1O15357 1258 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 KRT7P08729 469 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 RPL9P32969 192 aaKnown RBP13.52□□□□□ -0.25
CPNE1-201ENST00000317677 CACNA2D1P54289 1103 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 GSTA3Q16772 222 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 HADHQ16836 314 aaKnown RBP13.52□□□□□ -0.25
CPNE1-201ENST00000317677 RHBDF2Q6PJF5 856 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 CLEC20AQ6ZU45 233 aa13.52□□□□□ -0.25
CPNE1-201ENST00000317677 SLC26A9Q7LBE3 791 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms