RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ADAMTS19Q8TE59 1207 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 FGF14Q92915 247 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 SMOC2Q9H3U7 446 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 TDP1Q9NUW8 608 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 CFAP97Q9P2B7 532 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 STAP1Q9ULZ2 295 aa18.92■□□□□ 0.62
HMGA1-201ENST00000311487 GJC1P36383 396 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 TUBP50607 506 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 HDAC4P56524 1084 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 SH3RF2Q8TEC5 729 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 ACSF2Q96CM8 615 aaPredicted RBP18.91■□□□□ 0.62
HMGA1-201ENST00000311487 ASB16Q96NS5 453 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 NECTIN4Q96NY8 510 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 KLF16Q9BXK1 252 aaPredicted RBP18.91■□□□□ 0.62
HMGA1-201ENST00000311487 PLA2G2FQ9BZM2 168 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 UVRAGQ9P2Y5 699 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 SNX10Q9Y5X0 201 aa18.91■□□□□ 0.62
HMGA1-201ENST00000311487 LEFTY2O00292 366 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 PJA2O43164 708 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 BUB1BO60566 1050 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-201ENST00000311487 OLFM2O95897 454 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 TBX4P57082 545 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 SMAD2Q15796 467 aaKnown RBP18.9■□□□□ 0.62
HMGA1-201ENST00000311487 DENND1CQ8IV53 801 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 RHOT2Q8IXI1 618 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 NT5C3BQ969T7 300 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 ZFYVE19Q96K21 471 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 ZMYND15Q9H091 742 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 L2HGDHQ9H9P8 463 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 OLA1Q9NTK5 396 aaKnown RBP18.9■□□□□ 0.62
HMGA1-201ENST00000311487 LIMD1Q9UGP4 676 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 CAPN6Q9Y6Q1 641 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 I6L893 689 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-201ENST00000311487 TRDMT1O14717 391 aaKnown RBP18.9■□□□□ 0.62
HMGA1-201ENST00000311487 KLKB1P03952 638 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 GRM2Q14416 872 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 ARHGAP29Q52LW3 1261 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 TXNRD3NBQ6F5E7 133 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 TADA2BQ86TJ2 420 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 CCDC185Q8N715 623 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 SMARCD2Q92925 531 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 CNPY3Q9BT09 278 aa18.9■□□□□ 0.62
HMGA1-201ENST00000311487 IRAK2O43187 625 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 STC2O76061 302 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 SMTNL2Q2TAL5 461 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 KCNT1Q5JUK3 1230 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 MSANTD2Q6P1R3 559 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 DAAM2Q86T65 1068 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 TPCN2Q8NHX9 752 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 BHMTQ93088 406 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 TRIM62Q9BVG3 475 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 ZWILCHQ9H900 591 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 GPATCH2LQ9NWQ4 482 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 GDE1Q9NZC3 331 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 THEGQ9P2T0 379 aa18.89■□□□□ 0.61
HMGA1-201ENST00000311487 GOLGA6L7A0A1B0GV03 622 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 IGLV3-25P01717 112 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 ASGR2P07307 311 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 FCARP24071 287 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 DDX6P26196 483 aaKnown RBP eCLIP18.88■□□□□ 0.612e-10■□□□□ 8.7
HMGA1-201ENST00000311487 PTPN9P43378 593 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 VCPP55072 806 aaKnown RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 GNG11P61952 73 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 SLC7A9P82251 487 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 ARCQ7LC44 396 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 FCRL2Q96LA5 508 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 SERPINB11Q96P15 392 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 WDR24Q96S15 920 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 PEBP4Q96S96 227 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 CDK5RAP1Q96SZ6 601 aaKnown RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 PHF7Q9BWX1 381 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 TKTL2Q9H0I9 626 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 LINC00597Q9H2U6 94 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 WDCPQ9H6R7 721 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 KLHL11Q9NVR0 708 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 IP6K2Q9UHH9 426 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 PACSIN2Q9UNF0 486 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 TCF20Q9UGU0 1960 aaKnown RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 DPYSL4O14531 572 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 KRT86O43790 486 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 LRCH4O75427 683 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 PALMO75781 387 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 IL1R2P27930 398 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 MIPP30301 263 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 CORO1AP31146 461 aaKnown RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 GBP1P32455 592 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 RDXP35241 583 aaKnown RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 DNA2P51530 1060 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 TAS2R40P59535 323 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 ATP13A4Q4VNC1 1196 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 TRIM68Q6AZZ1 485 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 CC2D1AQ6P1N0 951 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-201ENST00000311487 KLHDC10Q6PID8 442 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 OTOP3Q7RTS5 596 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 TTC8Q8TAM2 541 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 SIK2Q9H0K1 926 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 TLR6Q9Y2C9 796 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 NUMBLQ9Y6R0 609 aa18.88■□□□□ 0.61
HMGA1-201ENST00000311487 GRID2IPA4D2P6 1211 aa18.87■□□□□ 0.61
HMGA1-201ENST00000311487 HEPACAM2A8MVW5 462 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms