RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TRPC4Q9UBN4 977 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 FXR2P51116 673 aaKnown RBP eCLIP14.22□□□□□ -0.13
CSPG4-201ENST00000308508 GRTP1Q5TC63 336 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 CAMK1DQ8IU85 385 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 BCL2L14Q9BZR8 327 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 DPY30Q9C005 99 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 PDGFCQ9NRA1 345 aa14.22□□□□□ -0.13
CSPG4-201ENST00000308508 ADGRL3Q9HAR2 1447 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 GLP2RO95838 553 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 FAXCQ5TGI0 409 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 ATG4AQ8WYN0 398 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 AP3S1Q92572 193 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 LENG1Q96BZ8 264 aaPredicted RBP14.21□□□□□ -0.13
CSPG4-201ENST00000308508 VANGL2Q9ULK5 521 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 PPP1R3GB7ZBB8 358 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 FCHO1O14526 889 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 PECAM1P16284 738 aaPredicted RBP14.21□□□□□ -0.13
CSPG4-201ENST00000308508 CDH18Q13634 790 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 APOPT1Q96IL0 206 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 NAALADL1Q9UQQ1 740 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 VAV1P15498 845 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 CDH3P22223 829 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 C10orf120Q5SQS8 335 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 BROXQ5VW32 411 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 OR6J1Q8NGC5 347 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 S100A13Q99584 98 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 R3HDM2Q9Y2K5 976 aaKnown RBP14.21□□□□□ -0.13
CSPG4-201ENST00000308508 PON1P27169 355 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 ZC2HC1CQ53FD0 456 aaPredicted RBP14.21□□□□□ -0.13
CSPG4-201ENST00000308508 PACS2Q86VP3 889 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 SLC20A1Q8WUM9 679 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF222Q9UK12 451 aa14.21□□□□□ -0.13
CSPG4-201ENST00000308508 MCL1Q07820 350 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 CCDC36Q8IYA8 594 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 CCDC185Q8N715 623 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 TSPAN14Q8NG11 270 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 STARD8Q92502 1023 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 CHORDC1Q9UHD1 332 aaPredicted RBP14.21□□□□□ -0.14
CSPG4-201ENST00000308508 ABT1Q9ULW3 272 aaKnown RBP14.21□□□□□ -0.14
CSPG4-201ENST00000308508 ERVK-7P63135 1459 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 SEC24AO95486 1093 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 PLEKP08567 350 aaPredicted RBP14.21□□□□□ -0.14
CSPG4-201ENST00000308508 AKR1D1P51857 326 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 TRIM32Q13049 653 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 FRG1Q14331 258 aaKnown RBP14.21□□□□□ -0.14
CSPG4-201ENST00000308508 LRRC17Q8N6Y2 441 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 ADGRE3Q9BY15 652 aa14.21□□□□□ -0.14
CSPG4-201ENST00000308508 AP1G2O75843 785 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 OR6B1O95007 311 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PKN1Q16512 942 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 CCNG2Q16589 344 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 FBXO42Q6P3S6 717 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 RIPK2O43353 540 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PGM3O95394 542 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 MTTPP55157 894 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 TSC22D1Q15714 1073 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 IER5Q5VY09 327 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 FNDC5Q8NAU1 212 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 EMILIN2Q9BXX0 1053 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 USP18Q9UMW8 372 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 NCAM2O15394 837 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PSMG1O95456 288 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 NR3C2P08235 984 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ALDH5A1P51649 535 aaPredicted RBP14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ATG14Q6ZNE5 492 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 NET1Q7Z628 596 aaPredicted RBP14.2□□□□□ -0.14
CSPG4-201ENST00000308508 SLFN11Q7Z7L1 901 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PLEKHG4BQ96PX9 1271 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 SLC9A7Q96T83 725 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 STN1Q9H668 368 aaKnown RBP14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PRMT7Q9NVM4 692 aaPredicted RBP14.2□□□□□ -0.14
CSPG4-201ENST00000308508 SHOC2Q9UQ13 582 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.2□□□□□ -0.14
CSPG4-201ENST00000308508 CRABP2P29373 138 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PTENP60484 403 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF177Q13360 481 aaPredicted RBP14.2□□□□□ -0.14
CSPG4-201ENST00000308508 MYLPFQ96A32 169 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 MNTQ99583 582 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PI4K2AQ9BTU6 479 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ARAP3Q8WWN8 1544 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 M0QYT0 321 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 WWP2O00308 870 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 SLC2A4P14672 509 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 GSTM5P46439 218 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 SLC11A2P49281 568 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 RHAGQ02094 409 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 RNPEPL1Q9HAU8 725 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ARHGAP28Q9P2N2 729 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 TFR2Q9UP52 801 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ALOX5P09917 674 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ALDH1A3P47895 512 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 MGAT5Q09328 741 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 FBXO25Q8TCJ0 367 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ASB2Q96Q27 587 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 C17orf75Q9HAS0 396 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 SIK3Q9Y2K2 1263 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 GZMAP12544 262 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 ERVK-24P63145 666 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 PTSQ03393 145 aa14.2□□□□□ -0.14
CSPG4-201ENST00000308508 KBTBD8Q8NFY9 601 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms