RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 LRRC4Q9HBW1 653 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 PCDHB4Q9Y5E5 795 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 MAGED1Q9Y5V3 778 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 MYH7P12883 1935 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CFAP99D6REC4 459 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DDX39AO00148 427 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TM7SF2O76062 418 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CPA1P15085 419 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 OAZ1P54368 228 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CHRNB3Q05901 458 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 KCTD21Q4G0X4 260 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SEL1L3Q68CR1 1132 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 HHIPL2Q6UWX4 724 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DPP9Q86TI2 863 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CASKIN2Q8WXE0 1202 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 FKBP10Q96AY3 582 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 MCCC1Q96RQ3 725 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 PRMT1Q99873 361 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 MARK1Q9P0L2 795 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 KLHL3Q9UH77 587 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SDR42E2A6NKP2 422 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TRIM3O75382 744 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SRPRAP08240 638 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 RGS4P49798 205 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 OXCT1P55809 520 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 C21orf59P57076 290 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TIMM10P62072 90 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DLG1Q12959 904 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 GRIK2Q13002 908 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 GRTP1Q5TC63 336 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CYP4F22Q6NT55 531 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TAF8Q7Z7C8 310 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 THEM5Q8N1Q8 247 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 PIWIL2Q8TC59 973 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 STAMQ92783 540 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DCUN1D1Q96GG9 259 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 RHOBTB2Q9BYZ6 727 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SCUBE2Q9NQ36 999 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DNPEPQ9ULA0 475 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CNTNAP5Q8WYK1 1306 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 NALCNQ8IZF0 1738 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 LDOC1O95751 146 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 GJA1P17302 382 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF33AQ06730 810 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 MGAT5Q09328 741 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TROAPQ12815 778 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CNPY1Q3B7I2 92 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DUPD1Q68J44 220 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TBC1D21Q8IYX1 336 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 ZBED8Q8IZ13 594 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 C10orf53Q8N6V4 93 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 C9orf43Q8TAL5 461 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 NKD2Q969F2 451 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 ASIC4Q96FT7 647 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CNDP2Q96KP4 475 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CPNE1Q99829 537 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SPRTNQ9H040 489 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 LRRC40Q9H9A6 602 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 ASAP1Q9ULH1 1129 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 AKT3Q9Y243 479 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 EVPLQ92817 2033 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 MED1Q15648 1581 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 PLIN4Q96Q06 1357 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 EEF2KO00418 725 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SLC29A2Q14542 456 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 RBBP7Q16576 425 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TYSND1Q2T9J0 566 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM119Q4V9L6 283 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SPANXN3Q5MJ09 141 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 FKBP1CQ5VVH2 108 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 NIM1KQ8IY84 436 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 PEX5LQ8IYB4 626 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SVOPLQ8N434 492 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 FAF2Q96CS3 445 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 COX4I2Q96KJ9 171 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 BBS2Q9BXC9 721 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 MTIF3Q9H2K0 278 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DENND2DQ9H6A0 471 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SIAEQ9HAT2 523 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SARS2Q9NP81 518 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 UBE2TQ9NPD8 197 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 DNAJC28Q9NX36 388 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TESMINQ9Y4I5 508 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 PEX16Q9Y5Y5 336 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CENPBD1B2RD01 187 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 WWP2O00308 870 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 TALDO1P37837 337 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 ATP12AP54707 1039 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 EIF2S3LQ2VIR3 472 aaKnown RBP5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SYDE2Q5VT97 1194 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 C7orf57Q8NEG2 295 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 OR6Y1Q8NGX8 325 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 SLC4A9Q96Q91 983 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 CROTQ9UKG9 612 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 USP20Q9Y2K6 914 aa5.38□□□□□ -1.55
SCN1A-201ENST00000303395 KIAA0100Q14667 2235 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 A0A087X0T9 212 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 C3orf70A6NLC5 250 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 LOC110117498-PIK3R3F6TDL0 507 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms