RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 HPDLQ96IR7 371 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 POLD4Q9HCU8 107 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 PRKCEQ02156 737 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 ZNF473Q8WTR7 871 aaKnown RBP12.38□□□□□ -0.43
PCF11-201ENST00000298281 FAM136AQ96C01 138 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 ZNF354BQ96LW1 612 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 COLEC11Q9BWP8 271 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 ADAM33Q9BZ11 813 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 RHBDL2Q9NX52 303 aa12.38□□□□□ -0.43
PCF11-201ENST00000298281 H3BN98 237 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 POLRMTO00411 1230 aaKnown RBP12.37□□□□□ -0.43
PCF11-201ENST00000298281 VPS26AO75436 327 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 KRT34O76011 436 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 CYP2C9P11712 490 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 ATP6V1B2P21281 511 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 TRAF2Q12933 501 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 TRIP10Q15642 601 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 SAMD3Q8N6K7 520 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 PIGKQ92643 395 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 GRIN3BO60391 1043 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 S100A6P06703 90 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 GEMP55040 296 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 MTA1Q13330 715 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 RAB11FIP2Q7L804 512 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 CDADC1Q9BWV3 514 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 LYVE1Q9Y5Y7 322 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 HOXA2O43364 376 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 CST8O60676 142 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 SMNDC1O75940 238 aaKnown RBP eCLIP12.37□□□□□ -0.43
PCF11-201ENST00000298281 PLA2G4FQ68DD2 849 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 LIN54Q6MZP7 749 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 ANKFN1Q8N957 763 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 SMYD1Q8NB12 490 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 MCUBQ9NWR8 336 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 RTN3O95197 1032 aaPredicted RBP12.37□□□□□ -0.43
PCF11-201ENST00000298281 MSH3P20585 1137 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 ADRM1Q16186 407 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 LMBRD2Q68DH5 695 aaPredicted RBP12.37□□□□□ -0.43
PCF11-201ENST00000298281 FAM192AQ9GZU8 254 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 MIR1-1HGQ9H1L0 117 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 EPC1Q9H2F5 836 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 LRRC4BQ9NT99 713 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 CHORDC1Q9UHD1 332 aaPredicted RBP12.37□□□□□ -0.43
PCF11-201ENST00000298281 ZNF232Q9UNY5 417 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 TMEM5Q9Y2B1 443 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 AP4S1Q9Y587 144 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 TPST1O60507 370 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 GRAP2O75791 330 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 RGS20O76081 388 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 CETPP11597 493 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 GSSP48637 474 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 SREBF2Q12772 1141 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 FAM220AQ7Z4H9 259 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 RNF180Q86T96 592 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 NSL1Q96IY1 281 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 MXRA8Q9BRK3 442 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 RHBGQ9H310 441 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 E7ENQ6 273 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 IFNA16P05015 189 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 ZNF23P17027 643 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 GEMIN4P57678 1058 aaKnown RBP12.37□□□□□ -0.43
PCF11-201ENST00000298281 NECAB2Q7Z6G3 386 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 METTL16Q86W50 562 aaKnown RBP12.37□□□□□ -0.43
PCF11-201ENST00000298281 JAMLQ86YT9 394 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 C9orf72Q96LT7 481 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 NDUFA13Q9P0J0 144 aa12.37□□□□□ -0.43
PCF11-201ENST00000298281 PSTPIP1O43586 416 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 TMCC2O75069 709 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 KCNA3P22001 575 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 PPIDQ08752 370 aaKnown RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 GPAT2Q6NUI2 795 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 ABRAXAS1Q6UWZ7 409 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 CASP12Q6UXS9 341 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 CCNI2Q6ZMN8 369 aaPredicted RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 ZNF333Q96JL9 665 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 ACOX2Q99424 681 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 UBQLN1Q9UMX0 589 aaKnown RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 A0A0X1KG70 313 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 STX16-NPEPL1H3BU86 382 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 STX16O14662 325 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 RPS12P25398 132 aaKnown RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 SUGP1Q8IWZ8 645 aaKnown RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 TERB1Q8NA31 727 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 DDHD1Q8NEL9 900 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 GPRC5AQ8NFJ5 357 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 FAM151AQ8WW52 585 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 ZNF669Q96BR6 464 aaPredicted RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 ERP27Q96DN0 273 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 UBE2OQ9C0C9 1292 aaKnown RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 ELP3Q9H9T3 547 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 EFCAB10A6NFE3 127 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 FXR2P51116 673 aaKnown RBP eCLIP12.36□□□□□ -0.434e-6■■■■□ 23.1
PCF11-201ENST00000298281 EXOSC10Q01780 885 aaKnown RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 DPY30Q9C005 99 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 C6orf62Q9GZU0 229 aaPredicted RBP12.36□□□□□ -0.43
PCF11-201ENST00000298281 RASSF1Q9NS23 344 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.36□□□□□ -0.439e-23■□□□□ 9.2
PCF11-201ENST00000298281 ZNF208O43345 1280 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 BPNT1O95861 308 aa12.36□□□□□ -0.43
PCF11-201ENST00000298281 COPAP53621 1224 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms