RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 CDH22Q9UJ99 828 aa15.18■□□□□ 0.02
CCNF-201ENST00000293968 SLC4A7Q9Y6M7 1214 aa15.18■□□□□ 0.02
CCNF-201ENST00000293968 NOP56O00567 594 aaKnown RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 TRDMT1O14717 391 aaKnown RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 ITGBL1O95965 494 aaPredicted RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 UQCRBP14927 111 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 TCN1P20061 433 aaPredicted RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 ADORA2AP29274 412 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 CRHR1P34998 444 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ZNF143P52747 638 aaPredicted RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 GBE1Q04446 702 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 CNGA3Q16281 694 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ATF7IP2Q5U623 682 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ACAD11Q709F0 780 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 NIM1KQ8IY84 436 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 C12orf29Q8N999 325 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 TMEM176AQ96HP8 235 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ELOVL4Q9GZR5 314 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 SDCBP2Q9H190 292 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ACAD9Q9H845 621 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 USP29Q9HBJ7 922 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 GPAMQ9HCL2 828 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ZNF358Q9NW07 568 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 INPP5FQ9Y2H2 1132 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 SCN9AQ15858 1988 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 SDR42E2A6NKP2 422 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ENPEPQ07075 957 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 LAMTOR4Q0VGL1 99 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 SCUBE3Q8IX30 993 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 CMTM5Q96DZ9 223 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 LRGUKQ96M69 825 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 EBNA1BP2Q99848 306 aaKnown RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 TBC1D12O60347 775 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 SERPINB9P50453 376 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 NUDT2P50583 147 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 SURF1Q15526 300 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 TMCO4Q5TGY1 634 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 MAGEB5Q9BZ81 275 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 AK5Q9Y6K8 562 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 CCDC78A2IDD5 438 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 EFNA5P52803 228 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 FOLH1Q04609 750 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 PDSS2Q86YH6 399 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 PHTF2Q8N3S3 785 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 UBR7Q8N806 425 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 FNIP1Q8TF40 1166 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ACO2Q99798 780 aaKnown RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 QTRT2Q9H974 415 aaKnown RBP15.17■□□□□ 0.02
CCNF-201ENST00000293968 XPNPEP3Q9NQH7 507 aa15.17■□□□□ 0.02
CCNF-201ENST00000293968 ADGRA2Q96PE1 1338 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 SPATA31C2B4DYI2 1134 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 RALBP11234 206 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 CYP2F1P24903 491 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 TCF7P36402 384 aaPredicted RBP15.16■□□□□ 0.02
CCNF-201ENST00000293968 GTF2A2P52657 109 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 CMC1Q7Z7K0 106 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 CDKL3Q8IVW4 592 aaPredicted RBP15.16■□□□□ 0.02
CCNF-201ENST00000293968 SLC4A11Q8NBS3 891 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 PCDH19Q8TAB3 1148 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 NAT14Q8WUY8 206 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 USP13Q92995 863 aaPredicted RBP15.16■□□□□ 0.02
CCNF-201ENST00000293968 AGAP3Q96P47 875 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 PGLYRP2Q96PD5 576 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 SNRNP25Q9BV90 132 aaKnown RBP15.16■□□□□ 0.02
CCNF-201ENST00000293968 OCEL1Q9H607 264 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 ZNF180Q9UJW8 692 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 POMPQ9Y244 141 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 PFDN1O60925 122 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 CCNIQ14094 377 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 FAM160B1Q5W0V3 765 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 KCNT2Q6UVM3 1135 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 TSPAN16Q9UKR8 245 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 SERPINE1P05121 402 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 HOXC6P09630 235 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 ERVK-10P10266 1014 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 MGAT1P26572 445 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 MLH1P40692 756 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 IDH3AP50213 366 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 ZPBP2Q6X784 338 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 XYLT2Q9H1B5 865 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 LHX5Q9H2C1 402 aa15.16■□□□□ 0.02
CCNF-201ENST00000293968 PIGRP01833 764 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 VAV1P15498 845 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 PMLP29590 882 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 ATXN1P54253 815 aaKnown RBP15.15■□□□□ 0.02
CCNF-201ENST00000293968 TMEM132BQ14DG7 1078 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 TEDDM1Q5T9Z0 273 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 CEP70Q8NHQ1 597 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 GRIP2Q9C0E4 1043 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 PCDH18Q9HCL0 1135 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 RHBDL2Q9NX52 303 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 DDX43Q9NXZ2 648 aaKnown RBP15.15■□□□□ 0.02
CCNF-201ENST00000293968 GINS2Q9Y248 185 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 C15orf38-AP3S2A0A0A6YYH1 394 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 MYOCOSA0A1B0GUC4 107 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 GLRA3O75311 464 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 ENO3P13929 434 aaPredicted RBP15.15■□□□□ 0.02
CCNF-201ENST00000293968 CDH5P33151 784 aaPredicted RBP15.15■□□□□ 0.02
CCNF-201ENST00000293968 CHN2P52757 468 aa15.15■□□□□ 0.02
CCNF-201ENST00000293968 PKNOX1P55347 436 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms