RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RBM15Q96T37 977 aaKnown RBP eCLIP17.43■□□□□ 0.38
CPSF4-201ENST00000292476 TBCBQ99426 244 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 PKMYT1Q99640 499 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 PCDH9Q9HC56 1237 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 USP18Q9UMW8 372 aa17.43■□□□□ 0.38
CPSF4-201ENST00000292476 PTPRSQ13332 1948 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SMAPO00193 183 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 PRPSAP2O60256 369 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 B4GALT3O60512 393 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 DGKIO75912 1065 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 GALTP07902 379 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 RDXP35241 583 aaKnown RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 PBX2P40425 430 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 CDKN2BP42772 138 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SLC11A1P49279 550 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 TKTL1P51854 596 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SMAD3P84022 425 aaKnown RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SLC25A11Q02978 314 aaKnown RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 RAB41Q5JT25 222 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 DAB2IPQ5VWQ8 1189 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 PCGF5Q86SE9 256 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 MAP7D3Q8IWC1 876 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 TTC13Q8NBP0 860 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 IRGQQ8WZA9 623 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 TOP1MTQ969P6 601 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SMOQ99835 787 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 ZCWPW1Q9H0M4 648 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 RRN3Q9NYV6 651 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SENP1Q9P0U3 644 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 TPX2Q9ULW0 747 aaKnown RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 STAP1Q9ULZ2 295 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 MICAL3Q7RTP6 2002 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SNX3O60493 162 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 GABBR2O75899 941 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 ATP2A2P16615 1042 aaKnown RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 FGFR3P22607 806 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 MIPP30301 263 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 GJC1P36383 396 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 MATKP42679 507 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 RABGGTBP53611 331 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 WDR5P61964 334 aaKnown RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 TAZQ16635 292 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 CCDC14Q49A88 953 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 VARS2Q5ST30 1063 aaKnown RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 FAM171A1Q5VUB5 890 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 FUT10Q6P4F1 479 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 ANKS3Q6ZW76 656 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 STRADAQ7RTN6 431 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 TMCO2Q7Z6W1 182 aaPredicted RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 GBP7Q8N8V2 638 aaPredicted RBP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 OR10T2Q8NGX3 314 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 KHSRPQ92945 711 aaKnown RBP eCLIP17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SGSM3Q96HU1 749 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 FETUBQ9UGM5 382 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 DNPEPQ9ULA0 475 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 SLC12A4Q9UP95 1085 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 ZNF148Q9UQR1 794 aa17.42■□□□□ 0.38
CPSF4-201ENST00000292476 TSC2P49815 1807 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 DAB1O75553 588 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 GRAP2O75791 330 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 BEST1O76090 585 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 TRUB2O95900 331 aaKnown RBP17.41■□□□□ 0.38
CPSF4-201ENST00000292476 BRAFP15056 766 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 NOS2P35228 1153 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 VPS41P49754 854 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 BCAR1P56945 870 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 DEFB103AP81534 67 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 MRPL58Q14197 206 aaKnown RBP17.41■□□□□ 0.38
CPSF4-201ENST00000292476 CTXN3Q4LDR2 81 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 CCDC38Q502W7 563 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 SWT1Q5T5J6 900 aaKnown RBP17.41■□□□□ 0.38
CPSF4-201ENST00000292476 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.41■□□□□ 0.383e-9■■■■■ 29.7
CPSF4-201ENST00000292476 Q7L0L9 218 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 VSIG1Q86XK7 387 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 SLC35B2Q8TB61 432 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 TEKT4Q8WW24 435 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 FAM149B1Q96BN6 582 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 GRAMD1AQ96CP6 724 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 PBX4Q9BYU1 374 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 POPDC2Q9HBU9 364 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 SLC40A1Q9NP59 571 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 NKIRAS1Q9NYS0 192 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 NAALADL1Q9UQQ1 740 aa17.41■□□□□ 0.38
CPSF4-201ENST00000292476 USP15Q9Y4E8 981 aaPredicted RBP17.41■□□□□ 0.38
CPSF4-201ENST00000292476 LRRD1A4D1F6 860 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 SUN1O94901 812 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 UPP2O95045 317 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 ZBED1O96006 694 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 BDNFP23560 247 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 ARSEP51690 589 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 PDK2Q15119 407 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 SLC25A52Q3SY17 297 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 TRPM8Q7Z2W7 1104 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 KCTD6Q8NC69 237 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 CMASQ8NFW8 434 aaPredicted RBP17.4■□□□□ 0.38
CPSF4-201ENST00000292476 C2orf15Q8WU43 125 aaKnown RBP17.4■□□□□ 0.38
CPSF4-201ENST00000292476 FAM172AQ8WUF8 416 aa17.4■□□□□ 0.38
CPSF4-201ENST00000292476 CENPIQ92674 756 aaPredicted RBP17.4■□□□□ 0.38
CPSF4-201ENST00000292476 PIWIL1Q96J94 861 aaKnown RBP17.4■□□□□ 0.38
CPSF4-201ENST00000292476 MAGEB18Q96M61 343 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms