RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 BCAT1P54687 386 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 YWHAEP62258 255 aaKnown RBP10.19□□□□□ -0.78
VPS41-201ENST00000265745 BYSLQ13895 437 aaKnown RBP10.19□□□□□ -0.78
VPS41-201ENST00000265745 SPDYCQ5MJ68 293 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 FYB2Q5VWT5 728 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 EGFLAMQ63HQ2 1017 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 RSRC2Q7L4I2 434 aaKnown RBP10.19□□□□□ -0.78
VPS41-201ENST00000265745 LPCAT2Q7L5N7 544 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 CHPFQ8IZ52 775 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 PGBD3Q8N328 593 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 LMO3Q8TAP4 145 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 UBA3Q8TBC4 463 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 KCTD13Q8WZ19 329 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 TFAP2BQ92481 460 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 TSC1Q92574 1164 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 NDRG1Q92597 394 aaKnown RBP10.19□□□□□ -0.78
VPS41-201ENST00000265745 BHMTQ93088 406 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 GABRG3Q99928 467 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 LSM14BQ9BX40 385 aaKnown RBP10.19□□□□□ -0.78
VPS41-201ENST00000265745 ULBP1Q9BZM6 244 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 DCLK3Q9C098 648 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 LRRC4Q9HBW1 653 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 BCCIPQ9P287 314 aaKnown RBP eCLIP10.19□□□□□ -0.78
VPS41-201ENST00000265745 HESX1Q9UBX0 185 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 RASAL2Q9UJF2 1139 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 AGO1Q9UL18 857 aaKnown RBP10.19□□□□□ -0.78
VPS41-201ENST00000265745 STRIP2Q9ULQ0 834 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 SLC27A6Q9Y2P4 619 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 DENND4CQ5VZ89 1909 aa10.19□□□□□ -0.78
VPS41-201ENST00000265745 PTPRDP23468 1912 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 GREB1Q4ZG55 1949 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 ANAPC1Q9H1A4 1944 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 SLC12A8A0AV02 714 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 LNP1A1A4G5 178 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 RNF225M0QZC1 329 aaPredicted RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 GFRA2O00451 464 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 KHNYNO15037 678 aaKnown RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 P4HA2O15460 535 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 GADD45BO75293 160 aaPredicted RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 HMBSP08397 361 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 HOXB2P14652 356 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 PTGER3P43115 390 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 DHPSP49366 369 aaPredicted RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 IRX4P78413 519 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 BST2Q10589 180 aaKnown RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 MORC3Q14149 939 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 TRIP4Q15650 581 aaPredicted RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 CNGA2Q16280 664 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 BSPRYQ5W0U4 402 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 RNF43Q68DV7 783 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 SDE2Q6IQ49 451 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 KLHL10Q6JEL2 608 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 KIAA1211LQ6NV74 962 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 TMEM270Q6UE05 265 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 LCLAT1Q6UWP7 414 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 CYP2U1Q7Z449 544 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 DENND1CQ8IV53 801 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 FAM217AQ8IXS0 508 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 TMEFF1Q8IYR6 380 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 IPO4Q8TEX9 1081 aaKnown RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 LRRN4Q8WUT4 740 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 SLC35F5Q8WV83 523 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 NELFBQ8WX92 580 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 PIGKQ92643 395 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 SPACA7Q96KW9 195 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 NT5C1BQ96P26 610 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 IPO9Q96P70 1041 aaKnown RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 ZSWIM1Q9BR11 485 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 CALCOCO1Q9P1Z2 691 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 RABGEF1Q9UJ41 708 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 OBSL1O75147 1896 aa10.18□□□□□ -0.78
VPS41-201ENST00000265745 CNOT1A5YKK6 2376 aaKnown RBP10.18□□□□□ -0.78
VPS41-201ENST00000265745 BICDL2A1A5D9 508 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 YJEFN3A6XGL0 299 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 C4orf47A7E2U8 309 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 PATE3B3GLJ2 98 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 WASH3PC4AMC7 463 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 CFAP99D6REC4 459 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 E7ENQ6 273 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 BIN1O00499 593 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 CDX4O14627 284 aaPredicted RBP10.17□□□□□ -0.78
VPS41-201ENST00000265745 ZBTB24O43167 697 aaPredicted RBP10.17□□□□□ -0.78
VPS41-201ENST00000265745 SETSIPP0DME0 302 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 MFAP3P55082 362 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 ADIGQ0VDE8 80 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 CETN1Q12798 172 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 CCDC40Q4G0X9 1142 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 SYT12Q8IV01 421 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 FMNL3Q8IVF7 1028 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 TRIM59Q8IWR1 403 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 SIX6OS1Q8N1H7 587 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 SCML4Q8N228 414 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 CPXM2Q8N436 756 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 EHBP1Q8NDI1 1231 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 EDEM1Q92611 657 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 KAT5Q92993 513 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 PLD4Q96BZ4 506 aa10.17□□□□□ -0.78
VPS41-201ENST00000265745 PIWIL1Q96J94 861 aaKnown RBP10.17□□□□□ -0.78
VPS41-201ENST00000265745 EDEM2Q9BV94 578 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms