RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CNOT6LQ96LI5 555 aaKnown RBP10.79□□□□□ -0.68
SCN1A-222ENST00000642141 CEP63Q96MT8 703 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 NT5C1BQ96P26 610 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 XPO6Q96QU8 1125 aaKnown RBP10.79□□□□□ -0.68
SCN1A-222ENST00000642141 ZSWIM1Q9BR11 485 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 RTKNQ9BST9 563 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 SRRTQ9BXP5 876 aaKnown RBP10.79□□□□□ -0.68
SCN1A-222ENST00000642141 POLMQ9NP87 494 aaPredicted RBP10.79□□□□□ -0.68
SCN1A-222ENST00000642141 CACNA2D2Q9NY47 1150 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 CLIC5Q9NZA1 410 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 SFMBT1Q9UHJ3 866 aa10.79□□□□□ -0.68
SCN1A-222ENST00000642141 MBD1Q9UIS9 605 aaPredicted RBP10.79□□□□□ -0.68
SCN1A-222ENST00000642141 AGO1Q9UL18 857 aaKnown RBP10.79□□□□□ -0.68
SCN1A-222ENST00000642141 EML5Q05BV3 1969 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 BCLAF3A2AJT9 711 aaKnown RBP10.78□□□□□ -0.68
SCN1A-222ENST00000642141 O00370 1275 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 XPO1O14980 1071 aaKnown RBP10.78□□□□□ -0.68
SCN1A-222ENST00000642141 MSI1O43347 362 aaKnown RBP10.78□□□□□ -0.68
SCN1A-222ENST00000642141 CACNG3O60359 315 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 GABBR2O75899 941 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 CISD3P0C7P0 127 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 VDRP11473 427 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 HOXB2P14652 356 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 GABRG2P18507 467 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 NTSR1P30989 418 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 BCAT1P54687 386 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 YWHAEP62258 255 aaKnown RBP10.78□□□□□ -0.68
SCN1A-222ENST00000642141 COG7P83436 770 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 BST2Q10589 180 aaKnown RBP10.78□□□□□ -0.68
SCN1A-222ENST00000642141 KCNH2Q12809 1159 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 PPM1JQ5JR12 505 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 PLA2G2CQ5R387 149 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 STPG1Q5TH74 334 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 BSPRYQ5W0U4 402 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 IL31Q6EBC2 164 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 PMF1Q6P1K2 205 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 NUDT18Q6ZVK8 323 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 BHLHA9Q7RTU4 235 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 FMNL3Q8IVF7 1028 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 SIX6OS1Q8N1H7 587 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 ARHGAP18Q8N392 663 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 UBR7Q8N806 425 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 LMO3Q8TAP4 145 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 CLEC4CQ8WTT0 213 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 RNF139Q8WU17 664 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 PIGKQ92643 395 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 FAXDC2Q96IV6 333 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 GTPBP4Q9BZE4 634 aaKnown RBP10.78□□□□□ -0.68
SCN1A-222ENST00000642141 UBXN6Q9BZV1 441 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 MIS12Q9H081 205 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 VPS45Q9NRW7 570 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 STRIP2Q9ULQ0 834 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 CLEC4EQ9ULY5 219 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 CACNA1AO00555 2505 aa10.78□□□□□ -0.68
SCN1A-222ENST00000642141 RALGAPA1Q6GYQ0 2036 aa10.77□□□□□ -0.68
SCN1A-222ENST00000642141 KIAA1549LQ6ZVL6 1849 aa10.77□□□□□ -0.68
SCN1A-222ENST00000642141 A0A1W2PQF6 199 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 BICDL2A1A5D9 508 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 M0QYV0 167 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 KRT5P13647 590 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 TBXAS1P24557 533 aaPredicted RBP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 P2RY2P41231 377 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 PTGER3P43115 390 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 APBA1Q02410 837 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 PAK1Q13153 545 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 GEN1Q17RS7 908 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 PREPLQ4J6C6 727 aaPredicted RBP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 PMS2CLQ68D20 193 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 PM20D1Q6GTS8 502 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 SDE2Q6IQ49 451 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 LPCAT2Q7L5N7 544 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 CYP2U1Q7Z449 544 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 ELOA2Q8IYF1 753 aaPredicted RBP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 RBBP8NLQ8NC74 664 aaPredicted RBP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 EHBP1Q8NDI1 1231 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 OLIG1Q8TAK6 271 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 DDI1Q8WTU0 396 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 SORCS1Q8WY21 1168 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 KREMEN1Q96MU8 473 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 CDK5RAP1Q96SZ6 601 aaKnown RBP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 CRACR2AQ9BSW2 395 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 INTS2Q9H0H0 1204 aaKnown RBP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 FSCN3Q9NQT6 498 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 MARK1Q9P0L2 795 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 PCDHGA5Q9Y5G8 931 aa10.77□□□□□ -0.69
SCN1A-222ENST00000642141 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 ATXN2Q99700 1313 aaKnown RBP10.77□□□□□ -0.69
SCN1A-222ENST00000642141 ABCA7Q8IZY2 2146 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 C4orf47A7E2U8 309 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 ZBTB24O43167 697 aaPredicted RBP10.76□□□□□ -0.69
SCN1A-222ENST00000642141 AFPP02771 609 aaKnown RBP10.76□□□□□ -0.69
SCN1A-222ENST00000642141 PAEPP09466 180 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 CHKAP35790 457 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 PPP1R2P41236 205 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 IRX4P78413 519 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 CETN1Q12798 172 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 MAP7D1Q3KQU3 841 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 HSF5Q4G112 596 aaPredicted RBP10.76□□□□□ -0.69
SCN1A-222ENST00000642141 FYB2Q5VWT5 728 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 RNF43Q68DV7 783 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms