RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SERPINF2P08697 491 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 USP17L7P0C7H9 530 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 NFKB1P19838 968 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 KLRC1P26715 233 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CDC25CP30307 473 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CBWD3Q5JTY5 395 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CBWD5Q5RIA9 395 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF697Q5TEC3 545 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 TRPM8Q7Z2W7 1104 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CACUL1Q86Y37 369 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 OR8D1Q8WZ84 308 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PHF20Q9BVI0 1012 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CDH7Q9ULB5 785 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PNPLA7Q6ZV29 1317 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 USP42Q9H9J4 1324 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 MYH8P13535 1937 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 FAM187AA6NFU0 413 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 FAM220BPB1ANY3 271 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 GTPBP1O00178 669 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 GLUD1P00367 558 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 APLP1P51693 650 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 SMAD1Q15797 465 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CNGA3Q16281 694 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 DGKKQ5KSL6 1271 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ELOA2Q8IYF1 753 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 QSOX1O00391 747 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CXCL14O95715 111 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 WEE2P0C1S8 567 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 NTSP30990 170 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 MAD2L1Q13257 205 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PWP1Q13610 501 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 C1DQ13901 141 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 SF3B3Q15393 1217 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PUS10Q3MIT2 529 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 GALNTL6Q49A17 601 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 BRSK2Q8IWQ3 736 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 DEFB118Q96PH6 123 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PACSIN1Q9BY11 444 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 GLIS2Q9BZE0 524 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PABPC3Q9H361 631 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 DIABLOQ9NR28 239 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 STMN3Q9NZ72 180 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CTNNAL1Q9UBT7 734 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PIPSLA2A3N6 862 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 SGTAO43765 313 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CLUP10909 449 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 MAPK8P45983 427 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CLK2P49760 499 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PDK2Q15119 407 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 FBXO47Q5MNV8 452 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 SNAP47Q5SQN1 464 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 POTEAQ6S8J7 498 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CENPLQ8N0S6 344 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 TSPAN14Q8NG11 270 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 BTBD9Q96Q07 612 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 DDX43Q9NXZ2 648 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 MTMR6Q9Y217 621 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 SNCAIPQ9Y6H5 919 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 LGALS16A8MUM7 142 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 RAD51BO15315 384 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 TPD52L2O43399 206 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ZBTB14O43829 449 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF7P17097 686 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 DSG3P32926 999 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 METTL7BQ6UX53 244 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PHYKPLQ8IUZ5 450 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CHPFQ8IZ52 775 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 LINC00301Q8NCQ3 95 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 OSMRQ99650 979 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PDGFDQ9GZP0 370 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 MRPS33Q9Y291 106 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 STON1Q9Y6Q2 735 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PIK3CDO00329 1044 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 OGTO15294 1046 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ATP5C1P36542 298 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PSEN1P49768 467 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ARFIP2P53365 341 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PRMT2P55345 433 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ERVK-21P61565 698 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 GFPT1Q06210 699 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 BOLA3Q53S33 107 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 LYPLAL1Q5VWZ2 237 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PLPP4Q5VZY2 271 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 EMBQ6PCB8 327 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 BHLHB9Q6PI77 547 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 GATAD2AQ86YP4 633 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 BEND7Q8N7W2 519 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CLIP3Q96DZ5 547 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 THUMPD3Q9BV44 507 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 HIPK3Q9H422 1215 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 NOVA2Q9UNW9 492 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PITPNM2Q9BZ72 1349 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 MYH9P35579 1960 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SAC3D1A6NKF1 404 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TAF4O00268 1085 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 CITO14578 2027 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 AKAP10O43572 662 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 KATNA1O75449 491 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 MYH6P13533 1939 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms