RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PREPLQ4J6C6 727 aaPredicted RBP20.14■□□□□ 0.81
CLN3-260ENST00000637578 C2orf27AQ580R0 203 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 MIIPQ5JXC2 388 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 GJB7Q6PEY0 223 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 RSRC2Q7L4I2 434 aaKnown RBP20.14■□□□□ 0.81
CLN3-260ENST00000637578 LUZP1Q86V48 1076 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 P2RY11Q96G91 374 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 TUBGCP2Q9BSJ2 902 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 ABCC13Q9NSE7 274 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 FBXO10Q9UK96 956 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 STRIP2Q9ULQ0 834 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 MMP17Q9ULZ9 603 aa20.14■□□□□ 0.81
CLN3-260ENST00000637578 KRT5P13647 590 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 LCP1P13796 627 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 PRKCSHP14314 528 aaPredicted RBP20.13■□□□□ 0.81
CLN3-260ENST00000637578 TYRP14679 529 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 PXNP49023 591 aaPredicted RBP20.13■□□□□ 0.81
CLN3-260ENST00000637578 RGS7P49802 495 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 APBA1Q02410 837 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 SIM2Q14190 667 aaPredicted RBP20.13■□□□□ 0.81
CLN3-260ENST00000637578 TRIP4Q15650 581 aaPredicted RBP20.13■□□□□ 0.81
CLN3-260ENST00000637578 LAIR1Q6GTX8 287 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 DPY19L2P1Q6NXN4 242 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 IL17RCQ8NAC3 791 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 KCNV2Q8TDN2 545 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 ZNF606Q8WXB4 792 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 SHC3Q92529 594 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 BBS2Q9BXC9 721 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 SIX2Q9NPC8 291 aa20.13■□□□□ 0.81
CLN3-260ENST00000637578 AGO1Q9UL18 857 aaKnown RBP20.13■□□□□ 0.81
CLN3-260ENST00000637578 FBXO21O94952 628 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 APBB3O95704 486 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 CORO1AP31146 461 aaKnown RBP20.12■□□□□ 0.81
CLN3-260ENST00000637578 CHKAP35790 457 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 KDSRQ06136 332 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 KRT31Q15323 416 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 EMC10Q5UCC4 262 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 TPGS1Q6ZTW0 290 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 FAM217AQ8IXS0 508 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 TERB1Q8NA31 727 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 STK32AQ8WU08 396 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 GAB3Q8WWW8 586 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 PLD4Q96BZ4 506 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 HHIPQ96QV1 700 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 NDST4Q9H3R1 872 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 TAB2Q9NYJ8 693 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 STARD13Q9Y3M8 1113 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 SLC12A8A0AV02 714 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 TBC1D3BA6NDS4 549 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 NEDD8-MDP1E9PL57 170 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 TRIM24O15164 1050 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 PENKP01210 267 aaPredicted RBP20.12■□□□□ 0.81
CLN3-260ENST00000637578 CISD3P0C7P0 127 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 ATP1A3P13637 1013 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 TGM1P22735 817 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 CRY1Q16526 586 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 VWA3BQ502W6 1294 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 MSANTD2Q6P1R3 559 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 EDEM1Q92611 657 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 XPO6Q96QU8 1125 aaKnown RBP20.12■□□□□ 0.81
CLN3-260ENST00000637578 SLC4A5Q9BY07 1137 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 ACP6Q9NPH0 428 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 NCDNQ9UBB6 729 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 HCN2Q9UL51 889 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 RAB23Q9ULC3 237 aa20.12■□□□□ 0.81
CLN3-260ENST00000637578 HBS1LQ9Y450 684 aaKnown RBP20.12■□□□□ 0.81
CLN3-260ENST00000637578 AXIN1O15169 862 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 MED7O43513 233 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 HMBSP08397 361 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 DENND1BQ6P3S1 775 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 RASSF3Q86WH2 238 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 DENND1CQ8IV53 801 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 FMNL3Q8IVF7 1028 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 CPXM2Q8N436 756 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 CCDC33Q8N5R6 958 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 ALLCQ8N6M5 410 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 CLEC4CQ8WTT0 213 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 RNF139Q8WU17 664 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 DNAJC17Q9NVM6 304 aaKnown RBP20.11■□□□□ 0.81
CLN3-260ENST00000637578 SFMBT1Q9UHJ3 866 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 STOML2Q9UJZ1 356 aa20.11■□□□□ 0.81
CLN3-260ENST00000637578 ADAM23O75077 832 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 RPP40O75818 363 aaKnown RBP20.1■□□□□ 0.81
CLN3-260ENST00000637578 CDK11BP21127 795 aaKnown RBP20.1■□□□□ 0.81
CLN3-260ENST00000637578 GNA15P30679 374 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 TIE1P35590 1138 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 DGKEP52429 567 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 FYB2Q5VWT5 728 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 GRAMD4Q6IC98 578 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 TMEM92Q6UXU6 159 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 PRR23BQ6ZRT6 265 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 NUDT18Q6ZVK8 323 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 KIAA2013Q8IYS2 634 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 GPR161Q8N6U8 529 aaKnown RBP20.1■□□□□ 0.81
CLN3-260ENST00000637578 TXNDC5Q8NBS9 432 aaKnown RBP20.1■□□□□ 0.81
CLN3-260ENST00000637578 HINFPQ9BQA5 517 aa20.1■□□□□ 0.81
CLN3-260ENST00000637578 LIMA1Q9UHB6 759 aaKnown RBP20.1■□□□□ 0.81
CLN3-260ENST00000637578 AJAP1Q9UKB5 411 aaPredicted RBP20.1■□□□□ 0.81
CLN3-260ENST00000637578 SGK1O00141 431 aa20.09■□□□□ 0.81
CLN3-260ENST00000637578 GFRA2O00451 464 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms