RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PTPN7P35236 360 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 CAMK1Q14012 370 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 PPP2R5EQ16537 467 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 CYP1B1Q16678 543 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 RFX6Q8HWS3 928 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 DCLK3Q9C098 648 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 CERS4Q9HA82 394 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 FNIP2Q9P278 1114 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 YBX2Q9Y2T7 364 aaKnown RBP20.9■□□□□ 0.94
CLN3-250ENST00000636839 GREB1Q4ZG55 1949 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 CARNS1A5YM72 827 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 FAM72CH0Y354 149 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 GRM6O15303 877 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 TJP3O95049 919 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 RTN3O95197 1032 aaPredicted RBP20.9■□□□□ 0.94
CLN3-250ENST00000636839 IGLV3-25P01717 112 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 HMGA1P17096 107 aaKnown RBP20.9■□□□□ 0.94
CLN3-250ENST00000636839 ADRA1BP35368 520 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 IRS1P35568 1242 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 COILP38432 576 aaPredicted RBP20.9■□□□□ 0.94
CLN3-250ENST00000636839 GGCXP38435 758 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 TWF1Q12792 350 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 FAM182AQ5T1J6 154 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 FAM72AQ5TYM5 149 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 FAM72DQ6L9T8 149 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 CCDC137Q6PK04 289 aaKnown RBP20.9■□□□□ 0.94
CLN3-250ENST00000636839 NPNTQ6UXI9 565 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 B4GALNT4Q76KP1 1039 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 FAM72BQ86X60 149 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 PCDH19Q8TAB3 1148 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 ANKRD7Q92527 254 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 PGAP3Q96FM1 320 aaPredicted RBP20.9■□□□□ 0.94
CLN3-250ENST00000636839 TRIM51Q9BSJ1 452 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 C10orf88Q9H8K7 445 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 ENTPD7Q9NQZ7 604 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 FBXW11Q9UKB1 542 aa20.9■□□□□ 0.94
CLN3-250ENST00000636839 HEXIM1O94992 359 aaKnown RBP20.89■□□□□ 0.93
CLN3-250ENST00000636839 CETN2P41208 172 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 CXCR3P49682 368 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 EIF4EBP2Q13542 120 aaPredicted RBP20.89■□□□□ 0.93
CLN3-250ENST00000636839 CLUL1Q15846 466 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 DPYSL2Q16555 572 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 FBXO38Q6PIJ6 1188 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 PQLC3Q8N755 202 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 KLHL5Q96PQ7 755 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 LRRC19Q9H756 370 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 CCSER2Q9H7U1 834 aa20.89■□□□□ 0.93
CLN3-250ENST00000636839 CWC15Q9P013 229 aaKnown RBP20.89■□□□□ 0.93
CLN3-250ENST00000636839 RARGP13631 454 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 PECAM1P16284 738 aaPredicted RBP20.88■□□□□ 0.93
CLN3-250ENST00000636839 GOT1P17174 413 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 PTGIRP43119 386 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 TUBB4BP68371 445 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 GUCY2DQ02846 1103 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 ANKRD20A8PQ5CZ79 823 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 BEND5Q7L4P6 421 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 GSPT2Q8IYD1 628 aaKnown RBP20.88■□□□□ 0.93
CLN3-250ENST00000636839 RNF139Q8WU17 664 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 RNF157Q96PX1 679 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 NCAPGQ9BPX3 1015 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 TKTL2Q9H0I9 626 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.88■□□□□ 0.93
CLN3-250ENST00000636839 MFHAS1Q9Y4C4 1052 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 NR2E3Q9Y5X4 410 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 PLXNA3P51805 1871 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 C2orf71A6NGG8 1288 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 MYBL2P10244 700 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 ELF1P32519 619 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 ALDH1A3P47895 512 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 DR1Q01658 176 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 EFEMP1Q12805 493 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 PDK2Q15119 407 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 PRUNE1Q86TP1 453 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 DDX42Q86XP3 938 aaKnown RBP eCLIP20.88■□□□□ 0.93
CLN3-250ENST00000636839 TCEAL8Q8IYN2 117 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 C12orf50Q8NA57 414 aaPredicted RBP20.88■□□□□ 0.93
CLN3-250ENST00000636839 FAM71BQ8TC56 605 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 LRRN4Q8WUT4 740 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 RNF34Q969K3 372 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 TTLL2Q9BWV7 592 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 SMOC2Q9H3U7 446 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 SLITRK6Q9H5Y7 841 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 WDCPQ9H6R7 721 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.88■□□□□ 0.93
CLN3-250ENST00000636839 RRN3Q9NYV6 651 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 STIM2Q9P246 746 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 XPO7Q9UIA9 1087 aaKnown RBP20.88■□□□□ 0.93
CLN3-250ENST00000636839 DNPEPQ9ULA0 475 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 INSL5Q9Y5Q6 135 aa20.88■□□□□ 0.93
CLN3-250ENST00000636839 IRAK2O43187 625 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 MAP3K6O95382 1288 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 CHRNA3P32297 505 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 BBS12Q6ZW61 710 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 CCDC105Q8IYK2 499 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 MRPL43Q8N983 215 aaKnown RBP20.87■□□□□ 0.93
CLN3-250ENST00000636839 NETO2Q8NC67 525 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 MICAL1Q8TDZ2 1067 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 EPB41L5Q9HCM4 733 aa20.87■□□□□ 0.93
CLN3-250ENST00000636839 TLR8Q9NR97 1041 aaKnown RBP20.87■□□□□ 0.93
CLN3-250ENST00000636839 ETNK2Q9NVF9 386 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms