RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GOLGA8OA6NCC3 632 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 FAM25EA8MYX2 175 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 GOLGA8NF8WBI6 632 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 GOLGA8RI6L899 631 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 FCHO1O14526 889 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SGTAO43765 313 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SEC24DO94855 1032 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 GCNT3O95395 438 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 MYCP01106 439 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 SREBF1P36956 1147 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 FKBP3Q00688 224 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 NR1H3Q13133 447 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 CALCOCO2Q13137 446 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ITGADQ13349 1161 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 AP3B2Q13367 1082 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 RAPGEF1Q13905 1077 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 OXA1LQ15070 435 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ASIC2Q16515 512 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 LSM12Q3MHD2 195 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 DCAF17Q5H9S7 520 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 XKR5Q6UX68 686 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 TAS2R42Q7RTR8 314 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 LURAP1LQ8IV03 231 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SLFN12Q8IYM2 578 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 KIAA2013Q8IYS2 634 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 PPM1KQ8N3J5 372 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 TERB1Q8NA31 727 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 TNIP2Q8NFZ5 429 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 JADE3Q92613 823 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 RMDN1Q96DB5 314 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ACAP3Q96P50 834 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 LSM14BQ9BX40 385 aaKnown RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 TP63Q9H3D4 680 aaPredicted RBP10.57□□□□□ -0.72
VPS39-214ENST00000614932 HIPK3Q9H422 1215 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 SLC38A10Q9HBR0 1119 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 ATPIF1Q9UII2 106 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 DAPK2Q9UIK4 370 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 COL4A3BPQ9Y5P4 624 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 GJA3Q9Y6H8 435 aa10.57□□□□□ -0.72
VPS39-214ENST00000614932 J3QRK9 145 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 CYP26A1O43174 497 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 SORBS3O60504 671 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 POLR2MP0CAP2 368 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 NR2F2P24468 414 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 CCNCP24863 283 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 ALDH1A3P47895 512 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 BMXP51813 675 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 NPEPPSP55786 919 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 GNG2P59768 71 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 OVGP1Q12889 678 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 DPYSQ14117 519 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 NFE2Q16621 373 aaPredicted RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 SPDYE2Q495Y8 402 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 AGAP7PQ5VUJ5 663 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 NPLOC4Q8TAT6 608 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 CRYGNQ8WXF5 182 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 ATP2A3Q93084 1043 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 C12orf43Q96C57 262 aaKnown RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 FBXL8Q96CD0 374 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 ISOC1Q96CN7 298 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 CFAP57Q96MR6 1250 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 VPS35Q96QK1 796 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 MRPL9Q9BYD2 267 aaKnown RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 EBF1Q9UH73 591 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 TMX2Q9Y320 296 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 PCDHA2Q9Y5H9 948 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 ARFGEF1Q9Y6D6 1849 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 ATRNL1Q5VV63 1379 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 A0A0A6YYK5 440 aaPredicted RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 ENPP3O14638 875 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 SCO2O43819 266 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 ALAS1P13196 640 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 HSPA6P17066 643 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 POLR2CP19387 275 aaPredicted RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 NMT1P30419 496 aaKnown RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 CASP4P49662 377 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 DLG4P78352 724 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 GK3PQ14409 553 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 TMED2Q15363 201 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 STK11Q15831 433 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 DCAF12L1Q5VU92 463 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 TTC7BQ86TV6 843 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 LDHDQ86WU2 507 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 DCP2Q8IU60 420 aaKnown RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 RTKN2Q8IZC4 609 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 Q8N9G6 341 aaPredicted RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 GALNT6Q8NCL4 622 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 MAML1Q92585 1016 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 ZNF486Q96H40 463 aaPredicted RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 GMLQ99445 158 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 TMEM120AQ9BXJ8 343 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 MROQ9BYG7 248 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 RUBCNLQ9H714 662 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 AAASQ9NRG9 546 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 WRAP73Q9P2S5 460 aaPredicted RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 DSEQ9UL01 958 aa10.56□□□□□ -0.72
VPS39-214ENST00000614932 APOBEC2Q9Y235 224 aaKnown RBP10.56□□□□□ -0.72
VPS39-214ENST00000614932 CYP3A7-CYP3A51PA0A087WV96 503 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 NFIBO00712 420 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 DDX3YO15523 660 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms