RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 CDY1Q9Y6F8 540 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 C2CD4BA6NLJ0 364 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 C2CD2LO14523 706 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 RASGRF2O14827 1237 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 LINC00271P0C7V0 271 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 PDGFRAP16234 1089 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 DESP17661 470 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 PSMA2P25787 234 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 IVDP26440 423 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 PTPN7P35236 360 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 ZNF143P52747 638 aaPredicted RBP12.18□□□□□ -0.46
VRK3-223ENST00000601341 SEC24CP53992 1094 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 COPS2P61201 443 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 OGDHQ02218 1023 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 GKAP1Q5VSY0 366 aaPredicted RBP12.18□□□□□ -0.46
VRK3-223ENST00000601341 SCN4BQ8IWT1 228 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 EMC1Q8N766 993 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 ATAD1Q8NBU5 361 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 CHMP6Q96FZ7 201 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 C8orf48Q96LL4 319 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 PGLYRP2Q96PD5 576 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 DCLK3Q9C098 648 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 SEMA4AQ9H3S1 761 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 MRPL17Q9NRX2 175 aaKnown RBP12.18□□□□□ -0.46
VRK3-223ENST00000601341 NEU2Q9Y3R4 380 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 RWDD3Q9Y3V2 267 aa12.18□□□□□ -0.46
VRK3-223ENST00000601341 TCRBV7S2A1N4TA0A589 114 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 MTMR11A4FU01 709 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 TP73O15350 636 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 GRAP2O75791 330 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 ZBED1O96006 694 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 SHBGP04278 402 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 GPD1P21695 349 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 OR1D2P34982 312 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 MAGEA10P43363 369 aaPredicted RBP12.17□□□□□ -0.46
VRK3-223ENST00000601341 NDUFV1P49821 464 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 ROR1Q01973 937 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 ADCY1Q08828 1119 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 ZNF252P-AS1Q0IIN9 211 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 TAF5Q15542 800 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 RNF19BQ6ZMZ0 732 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 GPRIN1Q7Z2K8 1008 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 SCML4Q8N228 414 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 CLEC4CQ8WTT0 213 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 RXFP2Q8WXD0 754 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 KHSRPQ92945 711 aaKnown RBP eCLIP12.17□□□□□ -0.46
VRK3-223ENST00000601341 RBM41Q96IZ5 413 aaKnown RBP12.17□□□□□ -0.46
VRK3-223ENST00000601341 CNPY3Q9BT09 278 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 ULBP1Q9BZM6 244 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 PPANQ9NQ55 473 aaKnown RBP12.17□□□□□ -0.46
VRK3-223ENST00000601341 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.17□□□□□ -0.46
VRK3-223ENST00000601341 ASNSD1Q9NWL6 643 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 USTQ9Y2C2 406 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 SSX2IPQ9Y2D8 614 aa12.17□□□□□ -0.46
VRK3-223ENST00000601341 DPYSL4O14531 572 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 RNF8O76064 485 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 TTC4O95801 387 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 RPL17P18621 184 aaKnown RBP12.16□□□□□ -0.46
VRK3-223ENST00000601341 SDC4P31431 198 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 BMPR1AP36894 532 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 SSR1P43307 286 aaKnown RBP12.16□□□□□ -0.46
VRK3-223ENST00000601341 RABGGTBP53611 331 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 YWHAZP63104 245 aaKnown RBP12.16□□□□□ -0.46
VRK3-223ENST00000601341 CREMQ03060 361 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 C9orf50Q5SZB4 431 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 TPGS2Q68CL5 300 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 PM20D1Q6GTS8 502 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 RCOR2Q8IZ40 523 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 CACNA2D3Q8IZS8 1091 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 KLHL23Q8NBE8 558 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 IRGQQ8WZA9 623 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 FAM149B1Q96BN6 582 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 ZNF317Q96PQ6 595 aaPredicted RBP12.16□□□□□ -0.46
VRK3-223ENST00000601341 NCAPGQ9BPX3 1015 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 CLSTN3Q9BQT9 956 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 USP3Q9Y6I4 520 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 VWA8A3KMH1 1905 aa12.16□□□□□ -0.46
VRK3-223ENST00000601341 WDR27A2RRH5 827 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 LCHNA4D1U4 455 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 TNFRSF10BO14763 440 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ADAM12O43184 909 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 USP17L7P0C7H9 530 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 HAPLN1P10915 354 aaPredicted RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 CTNNB1P35222 781 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 SLC5A3P53794 718 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 DAOAP59103 153 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 RPL10AP62906 217 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 DUSP4Q13115 394 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 DDR2Q16832 855 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 HADHQ16836 314 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 CPNE8Q86YQ8 564 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 TNS4Q8IZW8 715 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 RIBC1Q8N443 379 aaPredicted RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 ANKS4BQ8N8V4 417 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ZNF461Q8TAF7 563 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ADAM7Q9H2U9 754 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 PPCSQ9HAB8 311 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.15□□□□□ -0.46
VRK3-223ENST00000601341 FNIP2Q9P278 1114 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 AFF4Q9UHB7 1163 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms