RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TUBGCP3Q96CW5 907 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 THUMPD3Q9BV44 507 aaKnown RBP21.03■□□□□ 0.96
UPF1-207ENST00000599848 KCNQ5Q9NR82 932 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 GPRC5DQ9NZD1 345 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 CAB39Q9Y376 341 aaPredicted RBP21.03■□□□□ 0.96
UPF1-207ENST00000599848 MEI4A8MW99 385 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 ZNF268Q14587 947 aaPredicted RBP21.03■□□□□ 0.96
UPF1-207ENST00000599848 CDR2LQ86X02 465 aaPredicted RBP21.03■□□□□ 0.96
UPF1-207ENST00000599848 LRRC6Q86X45 466 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 TLL1O43897 1013 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 CAPN15O75808 1086 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 ARP10275 920 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 CDC25CP30307 473 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 RRAGDQ9NQL2 400 aaPredicted RBP21.03■□□□□ 0.96
UPF1-207ENST00000599848 MRPS6P82932 125 aaKnown RBP21.03■□□□□ 0.96
UPF1-207ENST00000599848 AP1ARQ63HQ0 302 aa21.03■□□□□ 0.96
UPF1-207ENST00000599848 AGGF1Q8N302 714 aaeCLIP21.03■□□□□ 0.96
UPF1-207ENST00000599848 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.03■□□□□ 0.96
UPF1-207ENST00000599848 ZSCAN5CA6NGD5 496 aaPredicted RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 C4BPBP20851 252 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 TRIP4Q15650 581 aaPredicted RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 SMTNL2Q2TAL5 461 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 HECTD3Q5T447 861 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 KIAA1324Q6UXG2 1013 aaKnown RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 DPP10Q8N608 796 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 HASPINQ8TF76 798 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 RUSC1Q9BVN2 902 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 NFKBIL1Q9UBC1 381 aaPredicted RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 MAGEC1O60732 1142 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 HMGCRP04035 888 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 COLGALT2Q8IYK4 626 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 POMGNT2Q8NAT1 580 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 EXO5Q9H790 373 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 RBM22Q9NW64 420 aaKnown RBP eCLIP21.02■□□□□ 0.967e-6■■□□□ 11.6
UPF1-207ENST00000599848 TMCO1Q9UM00 188 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 NAA20P61599 178 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 UNC93AQ86WB7 457 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 CISHQ9NSE2 258 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 FGF10O15520 208 aaPredicted RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 CATP04040 527 aaKnown RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 PABPC1P11940 636 aaKnown RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 C1QBPQ07021 282 aaKnown RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 CYLC2Q14093 348 aaPredicted RBP21.02■□□□□ 0.96
UPF1-207ENST00000599848 ACAP1Q15027 740 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 CBWD3Q5JTY5 395 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 CBWD5Q5RIA9 395 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 ADI1Q9BV57 179 aa21.02■□□□□ 0.96
UPF1-207ENST00000599848 LRRC7Q96NW7 1537 aa21.02■□□□□ 0.95
UPF1-207ENST00000599848 EIF3HO15372 352 aaKnown RBP eCLIP21.02■□□□□ 0.953e-6■■□□□ 12.9
UPF1-207ENST00000599848 MPOP05164 745 aa21.02■□□□□ 0.95
UPF1-207ENST00000599848 TKTP29401 623 aaKnown RBP21.02■□□□□ 0.95
UPF1-207ENST00000599848 CDH17Q12864 832 aa21.02■□□□□ 0.95
UPF1-207ENST00000599848 ATL1Q8WXF7 558 aa21.02■□□□□ 0.95
UPF1-207ENST00000599848 MAF1Q9H063 256 aa21.02■□□□□ 0.95
UPF1-207ENST00000599848 KATNA1O75449 491 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 VIL1P09327 827 aaKnown RBP21.01■□□□□ 0.95
UPF1-207ENST00000599848 HSPA13P48723 471 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 DEFA1P59665 94 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 DEFA3P59666 94 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 TROAPQ12815 778 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 NOL9Q5SY16 702 aaKnown RBP21.01■□□□□ 0.95
UPF1-207ENST00000599848 OTOAQ7RTW8 1153 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 IFNEQ86WN2 208 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.01■□□□□ 0.95
UPF1-207ENST00000599848 AP3M1Q9Y2T2 418 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 NR2C2P49116 596 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 CNGA3Q16281 694 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 NLRP14Q86W24 1093 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 SLAIN1Q8ND83 568 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 USP7Q93009 1102 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 ATP6V1HQ9UI12 483 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 ACOT9Q9Y305 439 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 HACD1B0YJ81 288 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 SPTLC1O15269 473 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 ADH1CP00326 375 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 RPSAP08865 295 aaKnown RBP21.01■□□□□ 0.95
UPF1-207ENST00000599848 RPL9P32969 192 aaKnown RBP21.01■□□□□ 0.95
UPF1-207ENST00000599848 LSP1P33241 339 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 ZNHIT3Q15649 155 aaPredicted RBP21.01■□□□□ 0.95
UPF1-207ENST00000599848 AGMOQ6ZNB7 445 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 ADCK1Q86TW2 530 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 LGI2Q8N0V4 545 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 POLR1DQ9Y2S0 133 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 CLTCQ00610 1675 aaKnown RBP21.01■□□□□ 0.95
UPF1-207ENST00000599848 JCHAINP01591 159 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 CCNG1P51959 295 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 LRRC49Q8IUZ0 686 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 SPACA7Q96KW9 195 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 GPN3Q9UHW5 284 aaPredicted RBP21.01■□□□□ 0.95
UPF1-207ENST00000599848 ENTPD4Q9Y227 616 aa21.01■□□□□ 0.95
UPF1-207ENST00000599848 SLC2A4P14672 509 aa21■□□□□ 0.95
UPF1-207ENST00000599848 HOXA10P31260 410 aaPredicted RBP21■□□□□ 0.95
UPF1-207ENST00000599848 COILP38432 576 aaPredicted RBP21■□□□□ 0.95
UPF1-207ENST00000599848 GGCXP38435 758 aa21■□□□□ 0.95
UPF1-207ENST00000599848 DENND5BQ6ZUT9 1274 aa21■□□□□ 0.95
UPF1-207ENST00000599848 CXorf40BQ96DE9 158 aa21■□□□□ 0.95
UPF1-207ENST00000599848 RIOX1Q9H6W3 641 aa21■□□□□ 0.95
UPF1-207ENST00000599848 INTS13Q9NVM9 706 aa21■□□□□ 0.95
UPF1-207ENST00000599848 RPS7P62081 194 aaKnown RBP21■□□□□ 0.95
UPF1-207ENST00000599848 VSNL1P62760 191 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms