RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	FUZ	Q9BT04	418 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	TTPAL	Q9BTX7	342 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	SIL1	Q9H173	461 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	OR10A2	Q9H208	303 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	RRAGD	Q9NQL2	400 aa	Predicted RBP	5.36	□□□□□ -1.55
SS18-223	ENST00000583595	PCDHB16	Q9NRJ7	776 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	ETAA1	Q9NY74	926 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	ZFR2	Q9UPR6	939 aa	Known RBP	5.36	□□□□□ -1.55
SS18-223	ENST00000583595	PCDHB7	Q9Y5E2	793 aa		5.36	□□□□□ -1.55
SS18-223	ENST00000583595	WIZ	O95785	1651 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	WDR62	O43379	1518 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	UBE2QL1	A1L167	161 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	CCDC78	A2IDD5	438 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	PTGES3L	E9PB15	166 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	TUBB4A	P04350	444 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	APOA4	P06727	396 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	HSPA1A	P0DMV8	641 aa	Known RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	HSPA1B	P0DMV9	641 aa	Known RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	PEPD	P12955	493 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	ALAD	P13716	330 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	KCNA3	P22001	575 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	PSMC2	P35998	433 aa	Known RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	HADHA	P40939	763 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	UBA7	P41226	1012 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	RNASE9	P60153	205 aa	Known RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	SF3A3	Q12874	501 aa	Known RBP eCLIP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	MYO1E	Q12965	1108 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	CDC16	Q13042	620 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	DCTN2	Q13561	401 aa	Known RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	R3HDM1	Q15032	1099 aa	Known RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	SEC23B	Q15437	767 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	GAGE13	Q4V321	117 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	MSANTD2	Q6P1R3	559 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	TAF2	Q6P1X5	1199 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	PXK	Q7Z7A4	578 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	TTC30A	Q86WT1	665 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	SNX32	Q86XE0	403 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	TTC39C	Q8N584	583 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	FAM71D	Q8N9W8	422 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	PHACTR3	Q96KR7	559 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	HIST1H2AA	Q96QV6	131 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	HERC2P3	Q9BVR0	1158 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	TXLNGY	Q9BZA5	131 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	TRIM5	Q9C035	493 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	FTO	Q9C0B1	505 aa	Known RBP eCLIP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	SMOC2	Q9H3U7	446 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	CHMP4B	Q9H444	224 aa	Known RBP	5.35	□□□□□ -1.55
SS18-223	ENST00000583595	CCDC134	Q9H6E4	229 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	BRF2	Q9HAW0	419 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	ZDHHC7	Q9NXF8	308 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	FAM30A	Q9NZY2	134 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	DNAJB11	Q9UBS4	358 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	OAZ3	Q9UMX2	235 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	RCE1	Q9Y256	329 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	NR2E1	Q9Y466	385 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	RAD54B	Q9Y620	910 aa		5.35	□□□□□ -1.55
SS18-223	ENST00000583595	FANCD2	Q9BXW9	1451 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	FAM170A	A1A519	330 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	ADM5	C9JUS6	153 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595		H7C0S8	307 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	GTPBP1	O00178	669 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	TNPO2	O14787	897 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	MUSK	O15146	869 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	ANP32C	O43423	234 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	ITGB1	P05556	798 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	HK1	P19367	917 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	CR2	P20023	1033 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	ARL3	P36405	182 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	HARS2	P49590	506 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	PRKAG1	P54619	331 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	RPS3A	P61247	264 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	MC1R	Q01726	317 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	HGFAC	Q04756	655 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	PSMD6	Q15008	389 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	P3H1	Q32P28	736 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	HS1BP3	Q53T59	392 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	ZNF569	Q5MCW4	686 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	SLC30A6	Q6NXT4	461 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	CLEC9A	Q6UXN8	241 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	TRABD2A	Q86V40	505 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	CNTROB	Q8N137	903 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	RNF169	Q8NCN4	708 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	SLC22A17	Q8WUG5	538 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	TMEM171	Q8WVE6	324 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	MARS2	Q96GW9	593 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	SMO	Q99835	787 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	DPYSL5	Q9BPU6	564 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	SLC25A18	Q9H1K4	315 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	C12orf65	Q9H3J6	166 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	UNKL	Q9H9P5	680 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	TLR8	Q9NR97	1041 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	CFDP1	Q9UEE9	299 aa	Predicted RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	VPS51	Q9UID3	782 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	CNOT7	Q9UIV1	285 aa	Known RBP	5.34	□□□□□ -1.55
SS18-223	ENST00000583595	ZNF112	Q9UJU3	913 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	SHOC2	Q9UQ13	582 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	PCDHA10	Q9Y5I2	948 aa		5.34	□□□□□ -1.55
SS18-223	ENST00000583595	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		5.33	□□□□□ -1.56

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