RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TRMT2BQ96GJ1 504 aaKnown RBP26.13■■□□□ 1.77
SHMT1-207ENST00000580002 HEMGNQ9BXL5 484 aa26.13■■□□□ 1.77
SHMT1-207ENST00000580002 TRIOBPQ9H2D6 2365 aa26.13■■□□□ 1.77
SHMT1-207ENST00000580002 LRRD1A4D1F6 860 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 C2orf78A6NCI8 922 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 ZMYND10O75800 440 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 KRT10P13645 584 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 MMRN1Q13201 1228 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 C10orf120Q5SQS8 335 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 GAREM2Q75VX8 874 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 ARHGAP18Q8N392 663 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 C12orf76Q8N812 135 aaPredicted RBP26.12■■□□□ 1.77
SHMT1-207ENST00000580002 PGAP3Q96FM1 320 aaPredicted RBP26.12■■□□□ 1.77
SHMT1-207ENST00000580002 SMOC2Q9H3U7 446 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 STAU2Q9NUL3 570 aaKnown RBP eCLIP26.12■■□□□ 1.77
SHMT1-207ENST00000580002 CLIC5Q9NZA1 410 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 SBDSQ9Y3A5 250 aaKnown RBP eCLIP26.12■■□□□ 1.77
SHMT1-207ENST00000580002 TLR5O60602 858 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 ZRANB2O95218 330 aaKnown RBP eCLIP26.12■■□□□ 1.77
SHMT1-207ENST00000580002 FGGP02679 453 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 KDELR1P24390 212 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 ARSEP51690 589 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 POLNQ7Z5Q5 900 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 MIB1Q86YT6 1006 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 CMASQ8NFW8 434 aaPredicted RBP26.12■■□□□ 1.77
SHMT1-207ENST00000580002 CORO1BQ9BR76 489 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 RNF38Q9H0F5 515 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 ZNF576Q9H609 170 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 IGFLR1Q9H665 355 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 FZD10Q9ULW2 581 aa26.12■■□□□ 1.77
SHMT1-207ENST00000580002 IRAK2O43187 625 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 KRT7P08729 469 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 GGCXP38435 758 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 CCR2P41597 374 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 CXCR3P49682 368 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 MLLT1Q03111 559 aaPredicted RBP26.11■■□□□ 1.77
SHMT1-207ENST00000580002 DUSP6Q16828 381 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 WHAMMP3Q1A5X7 153 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 ERMARDQ5T6L9 678 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 MSANTD2Q6P1R3 559 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 CCDC50Q8IVM0 306 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 EXD1Q8NHP7 514 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 AP1M1Q9BXS5 423 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 LMAN2LQ9H0V9 348 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 MTMR10Q9NXD2 777 aa26.11■■□□□ 1.77
SHMT1-207ENST00000580002 MTCL1Q9Y4B5 1905 aaKnown RBP26.11■■□□□ 1.77
SHMT1-207ENST00000580002 HMBSP08397 361 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 RALAP11233 206 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 CYP4F8P98187 520 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 KCTD6Q8NC69 237 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 SLC22A12Q96S37 553 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 KCTD15Q96SI1 283 aaPredicted RBP26.1■■□□□ 1.77
SHMT1-207ENST00000580002 CYP2S1Q96SQ9 504 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 PLEKHA4Q9H4M7 779 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 RRN3Q9NYV6 651 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 TRPM5Q9NZQ8 1165 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 XPO7Q9UIA9 1087 aaKnown RBP26.1■■□□□ 1.77
SHMT1-207ENST00000580002 RASAL2Q9UJF2 1139 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 CES2O00748 559 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 GABRR2P28476 465 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 NTHL1P78549 312 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 BOLA3Q53S33 107 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 SNX30Q5VWJ9 437 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 KAZNQ674X7 775 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 SPOCD1Q6ZMY3 1216 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 ITIH5Q86UX2 942 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 RCOR2Q8IZ40 523 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 MRPL38Q96DV4 380 aaKnown RBP26.1■■□□□ 1.77
SHMT1-207ENST00000580002 DHX35Q9H5Z1 703 aaKnown RBP26.1■■□□□ 1.77
SHMT1-207ENST00000580002 DNMT3BQ9UBC3 853 aaKnown RBP26.1■■□□□ 1.77
SHMT1-207ENST00000580002 AP4E1Q9UPM8 1137 aa26.1■■□□□ 1.77
SHMT1-207ENST00000580002 FAM72CH0Y354 149 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 COCHO43405 550 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 MYL4P12829 197 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 IL4RP24394 825 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 L1CAMP32004 1257 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 ADRA1BP35368 520 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 PSEN1P49768 467 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 CDH6P55285 790 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 STXBP5Q5T5C0 1151 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 FAM72AQ5TYM5 149 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 TXNDC8Q6A555 127 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 FAM72DQ6L9T8 149 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 FAM72BQ86X60 149 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 ACTRT1Q8TDG2 376 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 RNF34Q969K3 372 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 TCEAL4Q96EI5 215 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 TRIM62Q9BVG3 475 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 TKTL2Q9H0I9 626 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 TTYH1Q9H313 450 aaPredicted RBP26.09■■□□□ 1.77
SHMT1-207ENST00000580002 WDCPQ9H6R7 721 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 PCDH18Q9HCL0 1135 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 DDX56Q9NY93 547 aaKnown RBP26.09■■□□□ 1.77
SHMT1-207ENST00000580002 ASB3Q9Y575 518 aa26.09■■□□□ 1.77
SHMT1-207ENST00000580002 DESP17661 470 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 CDKN2BP42772 138 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 C2orf54Q08AI8 447 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 LONRF2Q1L5Z9 754 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 SEL1L2Q5TEA6 688 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 CCDC181Q5TID7 509 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms