RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SART1O43290 800 aaKnown RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 STC2O76061 302 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 TRUB2O95900 331 aaKnown RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 TMEM253P0C7T8 217 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 TCF4P15884 667 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 ABCB4P21439 1286 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 NOS2P35228 1153 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 ARHGAP25P42331 645 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 PTPN9P43378 593 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 FCHO2Q0JRZ9 810 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 EFEMP1Q12805 493 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 TRIP4Q15650 581 aaPredicted RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 C15orf59Q2T9L4 293 aaPredicted RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 PUS10Q3MIT2 529 aaKnown RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 C10orf120Q5SQS8 335 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 BTBD8Q5XKL5 378 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 VITQ6UXI7 678 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 OTOP3Q7RTS5 596 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 ADHFE1Q8IWW8 467 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 ARHGAP18Q8N392 663 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 RXFP2Q8WXD0 754 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 FAM149B1Q96BN6 582 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 CHFRQ96EP1 664 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 MYEOVQ96EZ4 313 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 PGAP3Q96FM1 320 aaPredicted RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 CFAP57Q96MR6 1250 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 ZNF830Q96NB3 372 aaPredicted RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 NECAB3Q96P71 396 aaPredicted RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 MCEEQ96PE7 176 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 TBCBQ99426 244 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 TRPC7Q9HCX4 862 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 OSGEPQ9NPF4 335 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 PIGVQ9NUD9 493 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 STRIP2Q9ULQ0 834 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 PCDHA13Q9Y5I0 950 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 CPQQ9Y646 472 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 ADGRG1Q9Y653 693 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 ZFP37Q9Y6Q3 630 aaPredicted RBP9.7□□□□□ -0.86
VPS35-211ENST00000569950 DUSP10Q9Y6W6 482 aa9.7□□□□□ -0.86
VPS35-211ENST00000569950 OTOL1A6NHN0 477 aaPredicted RBP9.69□□□□□ -0.86
VPS35-211ENST00000569950 KCNU1A8MYU2 1149 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 LEFTY2O00292 366 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 SCAMP3O14828 347 aaKnown RBP9.69□□□□□ -0.86
VPS35-211ENST00000569950 ARHGAP6O43182 974 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 CCP110O43303 1012 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 ECI2O75521 394 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 ASGR2P07307 311 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 H2AFZP0C0S5 128 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 MYBL1P10243 752 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 KRT3P12035 628 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 NCAM1P13591 858 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 GBP2P32456 591 aaPredicted RBP9.69□□□□□ -0.86
VPS35-211ENST00000569950 ATP5C1P36542 298 aaKnown RBP9.69□□□□□ -0.86
VPS35-211ENST00000569950 CXCR3P49682 368 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 HDAC4P56524 1084 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 RNASE9P60153 205 aaKnown RBP9.69□□□□□ -0.86
VPS35-211ENST00000569950 TSR1Q2NL82 804 aaKnown RBP9.69□□□□□ -0.86
VPS35-211ENST00000569950 GAB4Q2WGN9 574 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 SLC25A52Q3SY17 297 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 ARHGAP15Q53QZ3 475 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 DCAF6Q58WW2 860 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 IER5LQ5T953 404 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 DAB2IPQ5VWQ8 1189 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 NADSYN1Q6IA69 706 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 PPP1R2P3Q6NXS1 205 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 DNAJC24Q6P3W2 148 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 H2AFVQ71UI9 128 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 VPS36Q86VN1 386 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 MIB1Q86YT6 1006 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 FAM217AQ8IXS0 508 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 SH3RF2Q8TEC5 729 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 FNIP1Q8TF40 1166 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 BTBD6Q96KE9 485 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 RPGRIP1Q96KN7 1286 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 KXD1Q9BQD3 176 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 MAGEB5Q9BZ81 275 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 SYNCQ9H7C4 482 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 TMPRSS4Q9NRS4 437 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 TDP1Q9NUW8 608 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 SMPD4Q9NXE4 827 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS35-211ENST00000569950 MARCH2Q9P0N8 246 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 TRIM10Q9UDY6 481 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 PRKAG3Q9UGI9 489 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 XPO7Q9UIA9 1087 aaKnown RBP9.69□□□□□ -0.86
VPS35-211ENST00000569950 ZMYM5Q9UJ78 669 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 DNMT3LQ9UJW3 386 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 INTUQ9ULD6 942 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 NUMBLQ9Y6R0 609 aa9.69□□□□□ -0.86
VPS35-211ENST00000569950 HEPACAM2A8MVW5 462 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 CKMP06732 381 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 MBL2P11226 248 aaPredicted RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 RALAP11233 206 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 MAGEA1P43355 309 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 VAV2P52735 878 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 ZNF143P52747 638 aaPredicted RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 HADHBP55084 474 aaKnown RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 GPC5P78333 572 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 RING1Q06587 406 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 CCDC173Q0VFZ6 552 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms