RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ZNF75CPQ92670 426 aaPredicted RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 KRT35Q92764 455 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 ZNF486Q96H40 463 aaPredicted RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 METTL2AQ96IZ6 378 aaKnown RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 TYW5A2RUC4 315 aaKnown RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 KRT6AP02538 564 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 KRT6BP04259 564 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 RPL17P18621 184 aaKnown RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 CBX5P45973 191 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 SLC9A3P48764 834 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 PEX3P56589 373 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 GNA12Q03113 381 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 OVGP1Q12889 678 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 PDK1Q15118 436 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 MDH1BQ5I0G3 518 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 DHRS4L2Q6PKH6 230 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 TMEM179Q6ZVK1 233 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 LURAP1LQ8IV03 231 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 INO80BQ9C086 356 aaPredicted RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 MUC3BQ9H195 1237 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 VPS37BQ9H9H4 285 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 HEY2Q9UBP5 337 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 ADAMTS1Q9UHI8 967 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 MYH11P35749 1972 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 PCM1Q15154 2024 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 C1orf232A0A0U1RR37 186 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 ATP6V1G2-DDX39BF2Z307 99 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 CCDC188H7C350 402 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 MSH4O15457 936 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 CYP26A1O43174 497 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 EPN2O95208 641 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 GH2P01242 217 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 PLA2G4BP0C869 781 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 POU6F2P78424 691 aaPredicted RBP11.19□□□□□ -0.62
CLK3-226ENST00000569406 KLHL30Q0D2K2 578 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 NPTX1Q15818 432 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 SLC45A4Q5BKX6 768 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 KRT79Q5XKE5 535 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 PPP4R4Q6NUP7 873 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 DCLRE1AQ6PJP8 1040 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 TRIM59Q8IWR1 403 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 FLAD1Q8NFF5 587 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 ACER1Q8TDN7 264 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 SDCCAG3Q96C92 435 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 FIZ1Q96SL8 496 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 WDR18Q9BV38 432 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 IKZF4Q9H2S9 585 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 ARMC1Q9NVT9 282 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 ZDHHC7Q9NXF8 308 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 MOCS1Q9NZB8 636 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 WRAP73Q9P2S5 460 aaPredicted RBP11.19□□□□□ -0.62
CLK3-226ENST00000569406 ARMCX3Q9UH62 379 aaPredicted RBP11.19□□□□□ -0.62
CLK3-226ENST00000569406 EBF1Q9UH73 591 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 LRRC53A6NM62 1247 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 PSMD12O00232 456 aaPredicted RBP11.19□□□□□ -0.62
CLK3-226ENST00000569406 ALX3O95076 343 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 KRT13P13646 458 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 GRK2P25098 689 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 CENPCQ03188 943 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 PON2Q15165 354 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 MOGQ16653 247 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 MAN2A1Q16706 1144 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 CCDC14Q49A88 953 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 TRAF7Q6Q0C0 670 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 OLFM1Q99784 485 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 SLITRK6Q9H5Y7 841 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 SNTG2Q9NY99 539 aa11.19□□□□□ -0.62
CLK3-226ENST00000569406 SULT1C4O75897 302 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 HK2P52789 917 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 ZNF200P98182 395 aaPredicted RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 BNIP3Q12983 259 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 MOGSQ13724 837 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 TRMT5Q32P41 509 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 GLRX5Q86SX6 157 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 NDUFAF2Q8N183 169 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 FAM172AQ8WUF8 416 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 C10orf82Q8WW14 230 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 LSM14BQ9BX40 385 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 TXLNGYQ9BZA5 131 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 FBXO6Q9NRD1 293 aaPredicted RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 ARMCX1Q9P291 453 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 DNM3Q9UQ16 869 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 DTNAQ9Y4J8 743 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 ZMYM2Q9UBW7 1377 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 A0A1B0GTW7 788 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 F8W8V4 182 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 RBAK-RBAKDNI3L0D1 243 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 MEN1O00255 615 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 GIPC1O14908 333 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 RIPK2O43353 540 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 KRT7P08729 469 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 PIM1P11309 404 aaPredicted RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 HOXA13P31271 388 aaPredicted RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 FDFT1P37268 417 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 MCCD1P59942 119 aaPredicted RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 COPZ1P61923 177 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 MRPL28Q13084 256 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 FAM122CQ6P4D5 195 aa11.18□□□□□ -0.62
CLK3-226ENST00000569406 TRIT1Q9H3H1 467 aaKnown RBP11.18□□□□□ -0.62
CLK3-226ENST00000569406 ZNF219Q9P2Y4 722 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 137.2 ms