RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 COL27A1Q8IZC6 1860 aaPredicted RBP11.91□□□□□ -0.5
CDH3-208ENST00000569036 PTPRJQ12913 1337 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 FBN3Q75N90 2809 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 CPLX1O14810 134 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 OGTO15294 1046 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 COCHO43405 550 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 OPA1O60313 960 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 IGHV4-34P06331 123 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 IRF1P10914 325 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 PRKCHP24723 683 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 RBMS1P29558 406 aaKnown RBP11.91□□□□□ -0.5
CDH3-208ENST00000569036 EVCP57679 992 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 ZNF445P59923 1031 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 TAF10Q12962 218 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 RABEP1Q15276 862 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 C3orf38Q5JPI3 329 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 USP53Q70EK8 1073 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 ZSCAN30Q86W11 494 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 OSTM1Q86WC4 334 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 PTRH1Q86Y79 214 aaKnown RBP11.91□□□□□ -0.5
CDH3-208ENST00000569036 ADGRF2Q8IZF7 708 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 ERMNQ8TAM6 284 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 SLC46A1Q96NT5 459 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 NTPCRQ9BSD7 190 aaKnown RBP11.91□□□□□ -0.5
CDH3-208ENST00000569036 LHX5Q9H2C1 402 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 PDCL3Q9H2J4 239 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 GDF3Q9NR23 364 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 DPP3Q9NY33 737 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 EHD2Q9NZN4 543 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 MARK1Q9P0L2 795 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 ADGRG4Q8IZF6 3080 aa11.91□□□□□ -0.5
CDH3-208ENST00000569036 SFI1A8K8P3 1242 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 CDRT15L2A8MXV6 281 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 NPC1O15118 1278 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 ACO1P21399 889 aaKnown RBP11.9□□□□□ -0.5
CDH3-208ENST00000569036 MUTP22033 750 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 BDNFP23560 247 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 TNFRSF8P28908 595 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 CDH8P55286 799 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 NOP14P78316 857 aaKnown RBP11.9□□□□□ -0.5
CDH3-208ENST00000569036 FAM171BQ6P995 826 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 VSTM1Q6UX27 236 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 C4orf50Q6ZRC1 276 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 TPGS1Q6ZTW0 290 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 ZNF564Q8TBZ8 553 aaPredicted RBP11.9□□□□□ -0.5
CDH3-208ENST00000569036 MYLPFQ96A32 169 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 SKA1Q96BD8 255 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 BICD1Q96G01 975 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 ZNF560Q96MR9 790 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 JAKMIP1Q96N16 626 aaKnown RBP11.9□□□□□ -0.5
CDH3-208ENST00000569036 RUSC1Q9BVN2 902 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 BTBD1Q9H0C5 482 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 ZNF768Q9H5H4 540 aaKnown RBP11.9□□□□□ -0.5
CDH3-208ENST00000569036 C17orf75Q9HAS0 396 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 WDR35Q9P2L0 1181 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 TJP2Q9UDY2 1190 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 CPSF3Q9UKF6 684 aaKnown RBP11.9□□□□□ -0.5
CDH3-208ENST00000569036 C2CD2Q9Y426 696 aa11.9□□□□□ -0.5
CDH3-208ENST00000569036 LRRK1Q38SD2 2015 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 ZFC3H1O60293 1989 aaKnown RBP11.89□□□□□ -0.51
CDH3-208ENST00000569036 A0A1W2PPC4 97 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 SIGLEC6O43699 453 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 ATP2C2O75185 946 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 ANXA13P27216 316 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 CDC25AP30304 524 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 RXRGP48443 463 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 ZNF234Q14588 700 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 TBR1Q16650 682 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 KRTAP21-3Q3LHN1 58 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 BLOC1S2Q6QNY1 142 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 TMEM86AQ8N2M4 240 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 OR2T3Q8NH03 318 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 PRR11Q96HE9 360 aaPredicted RBP11.89□□□□□ -0.51
CDH3-208ENST00000569036 SLITRK1Q96PX8 696 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.89□□□□□ -0.51
CDH3-208ENST00000569036 MAGEC2Q9UBF1 373 aaPredicted RBP11.89□□□□□ -0.51
CDH3-208ENST00000569036 DNHD1Q96M86 4753 aa11.89□□□□□ -0.51
CDH3-208ENST00000569036 A0A1W2PR77 199 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 PMS2P1A4D2B8 440 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 TRIM38O00635 465 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 CYP26A1O43174 497 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 GREM1O60565 184 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 HUS1O60921 280 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 CDC45O75419 566 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 GJB6O95452 261 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 EPHX1P07099 455 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 RPS6KB1P23443 525 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 PCSK1P29120 753 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 CCT6AP40227 531 aaKnown RBP11.88□□□□□ -0.51
CDH3-208ENST00000569036 CASRP41180 1078 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 LIG4P49917 911 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 DUSP3P51452 185 aaPredicted RBP11.88□□□□□ -0.51
CDH3-208ENST00000569036 PSMC1P62191 440 aaKnown RBP11.88□□□□□ -0.51
CDH3-208ENST00000569036 DAB2P98082 770 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 SRSF6Q13247 344 aaKnown RBP11.88□□□□□ -0.51
CDH3-208ENST00000569036 NCAPHQ15003 741 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 GEN1Q17RS7 908 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 HAUS3Q68CZ6 603 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 KIAA0895LQ68EN5 471 aa11.88□□□□□ -0.51
CDH3-208ENST00000569036 CLEC14AQ86T13 490 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms