RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 FAM46AQ96IP4 442 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 RAX2Q96IS3 184 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 MAP6Q96JE9 813 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 AK8Q96MA6 479 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FANCD2OSQ96PS1 177 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 LBHD1Q9BQE6 289 aaPredicted RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 ZPBPQ9BS86 351 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 SLC12A9Q9BXP2 914 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 SMG9Q9H0W8 520 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 CHST8Q9H2A9 424 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 RMI1Q9H9A7 625 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 ERVMER34-1Q9H9K5 563 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 MKNK2Q9HBH9 465 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FRRS1LQ9P0K9 344 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 PLXNA1Q9UIW2 1896 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FAM184BQ9ULE4 1060 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 HSF4Q9ULV5 492 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 TBX20Q9UMR3 447 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 DNAJC16Q9Y2G8 782 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 DTNAQ9Y4J8 743 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 PCDHA2Q9Y5H9 948 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 NUMBLQ9Y6R0 609 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FAM169AQ9Y6X4 670 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FAM208AQ9UK61 1670 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 NOTCH2Q04721 2471 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 FAM205AQ6ZU69 1335 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 A0A0G2JMZ2 1700 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 DDX60LQ5H9U9 1706 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 LTBP2Q14767 1821 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 PRRC2BQ5JSZ5 2229 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 SYNJ2BP-COX16A0A087WUM0 186 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SHISA3A0PJX4 238 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 CCDC151A5D8V7 595 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 VWA3AA6NCI4 1184 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 GTPBP1O00178 669 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 POLRMTO00411 1230 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 PSMD14O00487 310 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 VWA5AO00534 786 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SCDO00767 359 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SCAMP1O15126 338 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 MUSKO15146 869 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 PRPSAP2O60256 369 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 COQ9O75208 318 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ACTL6BO94805 426 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 TUBBP07437 444 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 GAAP10253 952 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 MYL4P12829 197 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 MTHFD2P13995 350 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SELLP14151 372 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 NPPBP16860 134 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 FNTBP49356 437 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 HSD17B4P51659 736 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 TKTL1P51854 596 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SLC16A1P53985 500 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 TPD52P55327 224 aaPredicted RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 BCAR1P56945 870 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 HTD2P86397 168 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 CDK17Q00537 523 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 TEKQ02763 1124 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 MECOMQ03112 1051 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 DMWDQ09019 674 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 KCNAB2Q13303 367 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 RABEP1Q15276 862 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ZNF174Q15697 407 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 TRIM71Q2Q1W2 868 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 TYSND1Q2T9J0 566 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ADCK5Q3MIX3 580 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ZNF805Q5CZA5 627 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ZRANB3Q5FWF4 1079 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 NOL9Q5SY16 702 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 AKNAD1Q5T1N1 836 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ATG16L1Q676U5 607 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 RCSD1Q6JBY9 416 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 KLHL10Q6JEL2 608 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SHQ1Q6PI26 577 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 ARHGEF18Q6ZSZ5 1173 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 UNC13DQ70J99 1090 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 BTN2A1Q7KYR7 527 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 OTUD6AQ7L8S5 288 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ASCL5Q7RTU5 278 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ADGRG6Q86SQ4 1221 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 LINC00346Q8IVM7 164 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SHISA5Q8N114 240 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SRBD1Q8N5C6 995 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 WDTC1Q8N5D0 677 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 AOPEPQ8N6M6 819 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 OR56A3Q8NH54 315 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 BRSK1Q8TDC3 778 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 RUBCNQ92622 972 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 RAB24Q969Q5 203 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 ISL2Q96A47 359 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 EXOC4Q96A65 974 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 RMDN1Q96DB5 314 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 MRPL38Q96DV4 380 aaKnown RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 LTV1Q96GA3 475 aaPredicted RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 FEM1CQ96JP0 617 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 SPATA17Q96L03 361 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 Q96M66 194 aa3.22□□□□□ -1.89
VPS35-209ENST00000568642 NR1H4Q96RI1 486 aaPredicted RBP3.22□□□□□ -1.89
VPS35-209ENST00000568642 ABHD1Q96SE0 405 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms