RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 HTR3DQ70Z44 454 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 KCTD17Q8N5Z5 321 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 PDZD8Q8NEN9 1154 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 NOC3LQ8WTT2 800 aaKnown RBP12.45□□□□□ -0.42
CLK3-222ENST00000568232 WBP1Q96G27 269 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 HPDLQ96IR7 371 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 CNDP2Q96KP4 475 aaKnown RBP12.45□□□□□ -0.42
CLK3-222ENST00000568232 MMS19Q96T76 1030 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 LGMNQ99538 433 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 B3GNT5Q9BYG0 378 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 NACA2Q9H009 215 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.45□□□□□ -0.42
CLK3-222ENST00000568232 BLOC1S4Q9NUP1 217 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 MARK1Q9P0L2 795 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 THAP10Q9P2Z0 257 aaPredicted RBP12.45□□□□□ -0.42
CLK3-222ENST00000568232 SPTA1P02549 2419 aa12.45□□□□□ -0.42
CLK3-222ENST00000568232 SYNCRIPO60506 623 aaKnown RBP12.44□□□□□ -0.42
CLK3-222ENST00000568232 TBCAO75347 108 aaKnown RBP12.44□□□□□ -0.42
CLK3-222ENST00000568232 PTPN1P18031 435 aaKnown RBP12.44□□□□□ -0.42
CLK3-222ENST00000568232 ACO1P21399 889 aaKnown RBP12.44□□□□□ -0.42
CLK3-222ENST00000568232 ACTN2P35609 894 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 GNL1P36915 607 aaPredicted RBP12.44□□□□□ -0.42
CLK3-222ENST00000568232 ACADVLP49748 655 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 ENPP2Q13822 863 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 POSTNQ15063 836 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 GEN1Q17RS7 908 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 INAVAQ3KP66 663 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 TBC1D25Q3MII6 688 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 SNX30Q5VWJ9 437 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 ZNF720Q7Z2F6 126 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 OR5B17Q8NGF7 314 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 OVCA2Q8WZ82 227 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 BIRC7Q96CA5 298 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 FBXO10Q9UK96 956 aa12.44□□□□□ -0.42
CLK3-222ENST00000568232 UBR5O95071 2799 aaPredicted RBP12.43□□□□□ -0.42
CLK3-222ENST00000568232 TEX15Q9BXT5 2789 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 A0A1B0GTQ1 180 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 PAPSS1O43252 624 aaPredicted RBP12.43□□□□□ -0.42
CLK3-222ENST00000568232 FSBPO95073 299 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 RTN3O95197 1032 aaPredicted RBP12.43□□□□□ -0.42
CLK3-222ENST00000568232 TMEM191BP0C7N4 346 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 ZDHHC11BP0C7U3 371 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 PRKCHP24723 683 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 CDH8P55286 799 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 ZNF234Q14588 700 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 PKDCCQ504Y2 493 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 ADAT2Q7Z6V5 191 aaKnown RBP12.43□□□□□ -0.42
CLK3-222ENST00000568232 CCDC83Q8IWF9 413 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 EID2Q8N6I1 236 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 OR6B3Q8NGW1 331 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 SORCS1Q8WY21 1168 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 TTC9Q92623 222 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 KLF16Q9BXK1 252 aaPredicted RBP12.43□□□□□ -0.42
CLK3-222ENST00000568232 TRIM4Q9C037 500 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 ELOVL4Q9GZR5 314 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 SNX25Q9H3E2 840 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 ST6GALNAC4Q9H4F1 302 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 PCIF1Q9H4Z3 704 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 OSGEPQ9NPF4 335 aa12.43□□□□□ -0.42
CLK3-222ENST00000568232 R3HCC1Q9Y3T6 440 aaKnown RBP12.43□□□□□ -0.42
CLK3-222ENST00000568232 BOD1L1Q8NFC6 3051 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 TLR5O60602 858 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 EPHX1P07099 455 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 C1SP09871 688 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 GLDCP23378 1020 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 ABCD1P33897 745 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 DDIT3P35638 169 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 CSRP3P50461 194 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 TUBP50607 506 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 ZNF132P52740 706 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 SLC5A3P53794 718 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 MFAP3P55082 362 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 TMPRSS3P57727 454 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 ORC1Q13415 861 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 SHBQ15464 509 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 COLEC12Q5KU26 742 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 PRICKLE2Q7Z3G6 844 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 SFR1Q86XK3 245 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 TSC1Q92574 1164 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 ORAI3Q9BRQ5 295 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 PCED1AQ9H1Q7 454 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 INTS13Q9NVM9 706 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 TBC1D7Q9P0N9 293 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 KNL1Q8NG31 2342 aa12.42□□□□□ -0.42
CLK3-222ENST00000568232 CABIN1Q9Y6J0 2220 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 MDM4O15151 490 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 TSPAN3O60637 253 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 SEMA4FO95754 770 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 ITGAVP06756 1048 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 CDK4P11802 303 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 ABCB4P21439 1286 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 CD27P26842 260 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 NEK4P51957 841 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 C21orf59P57076 290 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 ZNF248Q8NDW4 579 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 SAP25Q8TEE9 199 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 RAD54LQ92698 747 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 ANKRD36BP1Q96IX9 119 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 CBWD1Q9BRT8 395 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 STRA6Q9BX79 667 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms