RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 BEAN1Q3B7T3 259 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 C5orf22Q49AR2 442 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 PDCD4Q53EL6 469 aaKnown RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 DPY19L2P1Q6NXN4 242 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 NCCRP1Q6ZVX7 275 aaPredicted RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 PLEKHM3Q6ZWE6 761 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 TBC1D1Q86TI0 1168 aaPredicted RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 SLC9B2Q86UD5 537 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 GALNT13Q8IUC8 556 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 ARHGEF19Q8IW93 802 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 C10orf67Q8IYJ2 551 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 LSMEM2Q8N112 164 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 RNF10Q8N5U6 811 aaKnown RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 MAGEB6Q8N7X4 407 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 C1orf162Q8NEQ5 155 aaPredicted RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 PARD3BQ8TEW8 1205 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 STON2Q8WXE9 905 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 ARHGAP45Q92619 1136 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 PPP1R14BQ96C90 147 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 SDCCAG3Q96C92 435 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 ZG16BQ96DA0 208 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 CATSPER2Q96P56 530 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 SLC2A13Q96QE2 648 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 PSKH2Q96QS6 385 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 CRAMP1Q96RY5 1269 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 ADPGKQ9BRR6 497 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 CDH19Q9H159 772 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 BHMT2Q9H2M3 363 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 SERHL2Q9H4I8 314 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 MROH8Q9H579 483 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 TTC12Q9H892 705 aaPredicted RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 OBP2AQ9NY56 170 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 DKK2Q9UBU2 259 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 ZNF112Q9UJU3 913 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 AJAP1Q9UKB5 411 aaPredicted RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 AGO2Q9UKV8 859 aaKnown RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 MYO6Q9UM54 1294 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 LIMCH1Q9UPQ0 1083 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 SIK3Q9Y2K2 1263 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 USP15Q9Y4E8 981 aaPredicted RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 ATP6V1DQ9Y5K8 247 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 DMRT1Q9Y5R6 373 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 PNPLA7Q6ZV29 1317 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 COL4A3Q01955 1670 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 AATKQ6ZMQ8 1374 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 CENPVL1A0A0U1RR11 272 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 C17orf113A0A1B0GUU1 675 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ANO9A1A5B4 782 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 GOLGA6L9A6NEM1 432 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 TMEM221A6NGB7 291 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 H0Y626 953 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SGK1O00141 431 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 AP3B1O00203 1094 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 CACNB4O00305 520 aaPredicted RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 EBAG9O00559 213 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SLC7A4O43246 635 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SULT1B1O43704 296 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 RANBP6O60518 1105 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 PALMO75781 387 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 USP1O94782 785 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 POMCP01189 267 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ZFYP08048 801 aaPredicted RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 DLATP10515 647 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 SFPQP23246 707 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS35-205ENST00000563984 SLC6A9P48067 706 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 NR2C2P49116 596 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 GUCY2FP51841 1108 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 RAP2BP61225 183 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 B2MP61769 119 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 KRT85P78386 507 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 MXRA7P84157 204 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 PIN1Q13526 163 aaPredicted RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 STIM1Q13586 685 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SUPT20HL1Q3ZLR7 823 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 CCDC38Q502W7 563 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 CCDC183Q5T5S1 534 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SYDE2Q5VT97 1194 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ITPRIPL1Q6GPH6 555 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ARMC6Q6NXE6 501 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 SEM1Q6ZVN7 128 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 LPCAT2Q7L5N7 544 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 PPP1R42Q7Z4L9 355 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ARHGAP22Q7Z5H3 698 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 EPHX4Q8IUS5 362 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 GRAMD2AQ8IUY3 354 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 MFN1Q8IWA4 741 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 RHOT2Q8IXI1 618 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 CBARPQ8N350 705 aaPredicted RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 NKAPQ8N5F7 415 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 CAMKK1Q8N5S9 505 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 TMCO5AQ8N6Q1 288 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ZBTB8BQ8NAP8 495 aaPredicted RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 SPC24Q8NBT2 197 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 FBXO18Q8NFZ0 1043 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 UTP15Q8TED0 518 aaKnown RBP5.43□□□□□ -1.54
VPS35-205ENST00000563984 RUFY2Q8WXA3 655 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 ATP6V0A1Q93050 837 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 GJA10Q969M2 543 aa5.43□□□□□ -1.54
VPS35-205ENST00000563984 TRIM63Q969Q1 353 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms