RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 FAM171A1Q5VUB5 890 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 FUT10Q6P4F1 479 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 PCGF5Q86SE9 256 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 DIS3LQ8TF46 1054 aaKnown RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 ARL8AQ96BM9 186 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 VWCEQ96DN2 955 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 OXCT2Q9BYC2 517 aaPredicted RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 FBXW11Q9UKB1 542 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 SHOC2Q9UQ13 582 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 FARP1Q9Y4F1 1045 aaPredicted RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 SMAPO00193 183 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 RIPK2O43353 540 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 EFEMP2O95967 443 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 IFNB1P01574 187 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 IGLV3-25P01717 112 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 RPL22P35268 128 aaKnown RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 GRIK1P39086 918 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 ARL4AP40617 200 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 CXCR3P49682 368 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 NME3Q13232 169 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 EIF4EBP2Q13542 120 aaPredicted RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 IKBKEQ14164 716 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 CTXN3Q4LDR2 81 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 EFHC2Q5JST6 749 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 CEP85LQ5SZL2 805 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 DENND2CQ68D51 928 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 TMEM109Q9BVC6 243 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 MAGEB5Q9BZ81 275 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 PHACTR1Q9C0D0 580 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 CDC42EP4Q9H3Q1 356 aaKnown RBP13.4□□□□□ -0.26
SNX1-211ENST00000560829 USP29Q9HBJ7 922 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 TMBIM4Q9HC24 238 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 PCDHB5Q9Y5E4 795 aa13.4□□□□□ -0.26
SNX1-211ENST00000560829 H3BRJ5 948 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 TRIM66O15016 1216 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 CLTBP09497 229 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 GOT1P17174 413 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 ZNF135P52742 658 aaPredicted RBP13.39□□□□□ -0.27
SNX1-211ENST00000560829 SMARCB1Q12824 385 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 SEMA3BQ13214 749 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 TERF2Q15554 542 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 NCBP2-AS2Q69YL0 99 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 DARS2Q6PI48 645 aaKnown RBP13.39□□□□□ -0.27
SNX1-211ENST00000560829 C1orf228Q6PIY5 440 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.39□□□□□ -0.272e-8■■■■■ 31.5
SNX1-211ENST00000560829 DEFB128Q7Z7B8 93 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 HOOK3Q86VS8 718 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 PYROXD2Q8N2H3 581 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 FAM71DQ8N9W8 422 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 OR2W6PQ8NHA6 318 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 SCAMP5Q8TAC9 235 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 RNF139Q8WU17 664 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 C10orf88Q9H8K7 445 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 FAM204AQ9H8W3 233 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 ABCC13Q9NSE7 274 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 TMEM39AQ9NV64 488 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 TMEM51Q9NW97 253 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 DDIT4Q9NX09 232 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 ABI2Q9NYB9 513 aaPredicted RBP13.39□□□□□ -0.27
SNX1-211ENST00000560829 HCSTQ9UBK5 93 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 ADAM21Q9UKJ8 722 aa13.39□□□□□ -0.27
SNX1-211ENST00000560829 GOLGA6CA6NDK9 693 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 GOLGA6L10A6NI86 522 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 DGKIO75912 1065 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 MYZAPP0CAP1 466 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 GOLGA6DP0CG33 693 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 HCAR3P49019 387 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 SLC29A2Q14542 456 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 BZW1Q7L1Q6 419 aaKnown RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 ZC3H18Q86VM9 953 aaKnown RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 CDKL3Q8IVW4 592 aaPredicted RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 DQX1Q8TE96 717 aaKnown RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 EDEM1Q92611 657 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 EXOC4Q96A65 974 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 ARHGEF4Q9NR80 690 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 GOLGA6AQ9NYA3 693 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 IL37Q9NZH6 218 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 ATP11BQ9Y2G3 1177 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 HEY1Q9Y5J3 304 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 SYNJ2BP-COX16A0A087WUM0 186 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 HMGB1P1B2RPK0 211 aaPredicted RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 H7C0C1 242 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 H7C4K7 107 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 I6L893 689 aaPredicted RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 TTC4O95801 387 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 ATP5OP48047 213 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 YWHAGP61981 247 aaKnown RBP eCLIP13.38□□□□□ -0.27
SNX1-211ENST00000560829 GBE1Q04446 702 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 SLC10A2Q12908 348 aaPredicted RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 GPR17Q13304 367 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 DPYSQ14117 519 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 PKN2Q16513 984 aaKnown RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 ARL13BQ3SXY8 428 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 RTP2Q5QGT7 225 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 EMC10Q5UCC4 262 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 ANKS3Q6ZW76 656 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 SCD5Q86SK9 330 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 CROCCP2Q86T23 111 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 TAC4Q86UU9 113 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms