RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 KREMEN2Q8NCW0 462 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 UBXN4Q92575 508 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 MYRFLQ96LU7 910 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 HERPUD2Q9BSE4 406 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 HEMGNQ9BXL5 484 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 SMOC2Q9H3U7 446 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 WDR6Q9NNW5 1121 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 GPATCH2LQ9NWQ4 482 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP3-218ENST00000560202 MSRAQ9UJ68 235 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 FBXW11Q9UKB1 542 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 COL4A4P53420 1690 aaPredicted RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 TCRBV7S2A1N4TA0A589 114 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 GLUD1P00367 558 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 CD48P09326 243 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 RARGP13631 454 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 KRT10P13645 584 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 H2AFXP16104 143 aaPredicted RBP11.67□□□□□ -0.54
USP3-218ENST00000560202 PTPN7P35236 360 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 CDKN2BP42772 138 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 CXCR3P49682 368 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 CDH6P55285 790 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 TUBB4BP68371 445 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 GPS2Q13227 327 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 EIF4EBP2Q13542 120 aaPredicted RBP11.67□□□□□ -0.54
USP3-218ENST00000560202 PDK2Q15119 407 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 PPP2R5EQ16537 467 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 TAZQ16635 292 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 CA9Q16790 459 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 TFDP3Q5H9I0 405 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 PDE12Q6L8Q7 609 aaKnown RBP11.67□□□□□ -0.54
USP3-218ENST00000560202 MSANTD2Q6P1R3 559 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 CCDC149Q6ZUS6 474 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 SND1Q7KZF4 910 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP3-218ENST00000560202 DNAJB7Q7Z6W7 309 aaPredicted RBP11.67□□□□□ -0.54
USP3-218ENST00000560202 MAP7D3Q8IWC1 876 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 ZDHHC14Q8IZN3 488 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 MMGT1Q8N4V1 131 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 PDZD8Q8NEN9 1154 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 MAIP1Q8WWC4 291 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 OVCA2Q8WZ82 227 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 CASP10Q92851 521 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 TRMT2BQ96GJ1 504 aaKnown RBP11.67□□□□□ -0.54
USP3-218ENST00000560202 NKX2-4Q9H2Z4 354 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP3-218ENST00000560202 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP3-218ENST00000560202 NUDT5Q9UKK9 219 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 FZD10Q9ULW2 581 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 AP4E1Q9UPM8 1137 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 NR2E1Q9Y466 385 aa11.67□□□□□ -0.54
USP3-218ENST00000560202 hCG_1818297A0A087WSY0 165 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 GOLGA6L10A0A0M3HER8 536 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 CCDC188H7C350 402 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 IRAK2O43187 625 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 C8AP07357 584 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 BMP8BP34820 402 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 ADRA1BP35368 520 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 CLCN4P51793 760 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 AIF1P55008 147 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 KLF1Q13351 362 aaPredicted RBP11.66□□□□□ -0.54
USP3-218ENST00000560202 KRT81Q14533 505 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 SIX1Q15475 284 aaPredicted RBP11.66□□□□□ -0.54
USP3-218ENST00000560202 DPYSL2Q16555 572 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 ERCC6LQ2NKX8 1250 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 KAZNQ674X7 775 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 ITIH5Q86UX2 942 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 PSTKQ8IV42 348 aaKnown RBP11.66□□□□□ -0.54
USP3-218ENST00000560202 FAM71BQ8TC56 605 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 PSMG2Q969U7 264 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 NTAN1Q96AB6 310 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 ZNF512Q96ME7 567 aaPredicted RBP11.66□□□□□ -0.54
USP3-218ENST00000560202 SERPINB11Q96P15 392 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 CALN1Q9BXU9 219 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 DHX35Q9H5Z1 703 aaKnown RBP11.66□□□□□ -0.54
USP3-218ENST00000560202 WDCPQ9H6R7 721 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 CERS4Q9HA82 394 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 PCDH18Q9HCL0 1135 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 OLA1Q9NTK5 396 aaKnown RBP11.66□□□□□ -0.54
USP3-218ENST00000560202 SFMBT1Q9UHJ3 866 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 ASB3Q9Y575 518 aa11.66□□□□□ -0.54
USP3-218ENST00000560202 ZNF840PA6NDX5 716 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 TJP3O95049 919 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 C1RP00736 705 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 LRG1P02750 347 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 L1CAMP32004 1257 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 ADCY2Q08462 1091 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 DPYSL3Q14195 570 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 NAA30Q147X3 362 aaPredicted RBP11.65□□□□□ -0.54
USP3-218ENST00000560202 ARL13BQ3SXY8 428 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 EFHC2Q5JST6 749 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 SNX30Q5VWJ9 437 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 PPP2R2DQ66LE6 453 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 KLHL7Q8IXQ5 586 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 PRELID2Q8N945 189 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 ARNTL2Q8WYA1 636 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 RNF34Q969K3 372 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 KRT12Q99456 494 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 MAGEB5Q9BZ81 275 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 SLC28A3Q9HAS3 691 aa11.65□□□□□ -0.54
USP3-218ENST00000560202 TMPRSS4Q9NRS4 437 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms